PlantSME Plant secondary metabolism enzyme database

Solanum lycopersicum (solanum_lycopersicum)

Imported from atlas release summary for Solanum lycopersicum.

1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 565 19 UGT (201) View species results
Alkaloid pathway 398 24 7DLGT (94) View species results
Phenylpropanoid pathway 382 12 POD (160) View species results
Flavonoid pathway 266 15 UFGT (174) View species results
Rosmarinic acid pathway 176 7 C4H (72) View species results
Steroid pathway 109 12 SMT1/SMT2/SMT3 (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1833 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 308 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Slyc04G0027220.1 Alkaloid 7DLGT low borderline
Slyc04G0028290.1 Alkaloid 7DLGT low borderline
Slyc05G0001020.1 Alkaloid 7DLGT low borderline
Slyc05G0001240.1 Alkaloid 7DLGT medium pass
Slyc05G0001250.1 Alkaloid 7DLGT medium pass
Slyc05G0006070.1 Alkaloid 7DLGT medium pass
Slyc05G0007160.1 Alkaloid 7DLGT low borderline
Slyc05G0010440.1 Alkaloid 7DLGT low borderline
Slyc05G0012590.1 Alkaloid 7DLGT low borderline
Slyc05G0012600.1 Alkaloid 7DLGT low borderline
Slyc05G0019760.1 Alkaloid 7DLGT low borderline
Slyc05G0021340.1 Alkaloid 7DLGT high pass
Slyc05G0021590.1 Alkaloid 7DLGT low borderline
Slyc05G0021880.1 Alkaloid 7DLGT low borderline
Slyc05G0022330.1 Alkaloid 7DLGT medium pass
Slyc05G0022400.1 Alkaloid 7DLGT low borderline
Slyc05G0023930.1 Alkaloid 7DLGT low borderline
Slyc05G0023940.1 Alkaloid 7DLGT low borderline
Slyc05G0024490.1 Alkaloid 7DLGT medium pass
Slyc06G0001750.1 Alkaloid 7DLGT medium pass
Slyc06G0014070.1 Alkaloid 7DLGT medium pass
Slyc06G0014120.1 Alkaloid 7DLGT medium pass
Slyc06G0022330.1 Alkaloid 7DLGT low borderline
Slyc06G0022350.1 Alkaloid 7DLGT low borderline
Slyc06G0022360.1 Alkaloid 7DLGT low borderline
Slyc06G0026140.1 Alkaloid 7DLGT medium pass
Slyc06G0026880.1 Alkaloid 7DLGT low borderline
Slyc07G0001850.1 Alkaloid 7DLGT low borderline
Slyc07G0001950.1 Alkaloid 7DLGT low borderline
Slyc07G0003450.1 Alkaloid 7DLGT medium pass
Slyc07G0006020.1 Alkaloid 7DLGT medium pass
Slyc07G0011010.1 Alkaloid 7DLGT low borderline
Slyc07G0011040.1 Alkaloid 7DLGT low borderline
Slyc07G0012390.1 Alkaloid 7DLGT low borderline
Slyc07G0012410.1 Alkaloid 7DLGT medium pass
Slyc07G0012420.1 Alkaloid 7DLGT low borderline
Slyc07G0012450.1 Alkaloid 7DLGT low borderline
Slyc07G0012460.1 Alkaloid 7DLGT medium pass
Slyc07G0012470.1 Alkaloid 7DLGT low borderline
Slyc07G0012510.1 Alkaloid 7DLGT low borderline
Slyc07G0012520.1 Alkaloid 7DLGT low borderline
Slyc07G0012530.1 Alkaloid 7DLGT low borderline
Slyc07G0012550.1 Alkaloid 7DLGT medium pass
Slyc07G0012740.1 Alkaloid 7DLGT low borderline
Slyc07G0012770.1 Alkaloid 7DLGT low borderline
Slyc07G0012780.1 Alkaloid 7DLGT medium pass
Slyc07G0012800.1 Alkaloid 7DLGT low borderline
Slyc07G0012810.1 Alkaloid 7DLGT low borderline
Slyc07G0012820.1 Alkaloid 7DLGT low borderline
Slyc08G0001500.1 Alkaloid 7DLGT high pass