Solanum lycopersicum (solanum_lycopersicum)
Imported from atlas release summary for Solanum lycopersicum.
1896
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1896
Candidate Genes
C4H
6.51%
C3'H/CYP98A
5.9%
BAHD
5.33%
UGT
4.82%
7DLGT
4.23%
UFGT
4.0%
CYP76
3.77%
T3O
3.64%
Other Families
61.8%
More Families (98)
POD
168
3.54%
4CL
165
3.47%
IFS
163
3.43%
F3H
154
3.24%
F3'H/CYP75B
115
2.42%
H6H
106
2.23%
DWF4/CYP90B1
104
2.19%
BR6OX2/CYP85A2
98
2.06%
NMT
90
1.9%
CODM/T6ODM
88
1.85%
CYP71
80
1.68%
STR
73
1.54%
SMT1/SMT2/SMT3
67
1.41%
TPS
57
1.2%
CAD
56
1.18%
TRI/TRII
53
1.12%
GES
51
1.07%
PAL
51
1.07%
TAT
47
0.99%
LAC
44
0.93%
CAS
44
0.93%
T16H
41
0.86%
CSE
38
0.8%
BBE
35
0.74%
FNS
34
0.72%
CYP90D1
34
0.72%
7DLH
33
0.69%
PYKS
32
0.67%
G8O/G8H
32
0.67%
HCT
32
0.67%
SLS
31
0.65%
IFR
31
0.65%
F5H/CYP84A
30
0.63%
CCoAOMT
30
0.63%
GS
29
0.61%
SGD
26
0.55%
IO
26
0.55%
8HGO
26
0.55%
TYDC_DDC
25
0.53%
COMT
25
0.53%
ANR
23
0.48%
CCR
23
0.48%
RAS
23
0.48%
F3'5'H/CYP75A
22
0.46%
BR6OX1/CYP85A1
22
0.46%
16OMT
21
0.44%
LAMT
21
0.44%
PMT
21
0.44%
ANS/LDOX
21
0.44%
CPD/CYP90A1
19
0.4%
NCS
16
0.34%
DFR
16
0.34%
CYP51G1
16
0.34%
FPPS
13
0.27%
CNMT
12
0.25%
COR
10
0.21%
SQS/FDFT1
9
0.19%
MPO
8
0.17%
CYP719
8
0.17%
CHS
8
0.17%
SQE
8
0.17%
ROT3/CYP90C1
8
0.17%
GGPPS
8
0.17%
CYP80B1
7
0.15%
HPPR
7
0.15%
TDC
6
0.13%
CPR
6
0.13%
DET2
6
0.13%
HMGR
6
0.13%
MVD
6
0.13%
AACT
6
0.13%
ISY
5
0.11%
SMO1/SMO2
5
0.11%
CHI
4
0.08%
MVK
4
0.08%
DXS
4
0.08%
HMGS
4
0.08%
6OMT_4OMT_SOMT
3
0.06%
CYP80F1
3
0.06%
ODC
3
0.06%
DWF7
3
0.06%
XMT_MXMT_DXMT
2
0.04%
ADC
2
0.04%
FLS
2
0.04%
DWF5
2
0.04%
DWF1
2
0.04%
HYD1
2
0.04%
GPPS
2
0.04%
DXR
2
0.04%
IDI
2
0.04%
PMK
2
0.04%
FK
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
MDS/IspF
1
0.02%
HDS/IspG
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 565 | 19 | UGT (201) | View species results |
| Alkaloid pathway | 398 | 24 | 7DLGT (94) | View species results |
| Phenylpropanoid pathway | 382 | 12 | POD (160) | View species results |
| Flavonoid pathway | 266 | 15 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 176 | 7 | C4H (72) | View species results |
| Steroid pathway | 109 | 12 | SMT1/SMT2/SMT3 (47) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1833 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 308 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Slyc04G0024540.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc04G0024960.1 | Terpenoid | BAHD | medium | pass | BAHD__00028__sp_O80467_SDT_ARATH |
| Slyc04G0025140.1 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Slyc04G0025280.1 | Terpenoid | BAHD | medium | pass | BAHD__00057__sp_Q8L7R3_LPCT1_ARATH |
| Slyc04G0026040.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Slyc04G0027750.1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| Slyc04G0028050.1 | Terpenoid | BAHD | medium | pass | BAHD__00050__sp_Q6DR03_ZDHC3_ARATH |
| Slyc05G0001560.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc05G0007290.1 | Terpenoid | BAHD | medium | pass | BAHD__00068__sp_Q9C533_ZDHC1_ARATH |
| Slyc05G0008960.1 | Terpenoid | BAHD | medium | pass | BAHD__00024__sp_O23393_BIA1_ARATH |
| Slyc05G0010320.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Slyc05G0010350.1 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Slyc05G0010360.1 | Terpenoid | BAHD | medium | pass | BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC |
| Slyc05G0010630.1 | Terpenoid | BAHD | medium | pass | BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH |
| Slyc05G0015280.1 | Terpenoid | BAHD | medium | pass | BAHD__00015__sp_D2Y3X2_PUN1_CAPAN |
| Slyc05G0015780.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Slyc05G0017980.1 | Terpenoid | BAHD | medium | pass | BAHD__00048__sp_Q5M757_ZDH15_ARATH |
| Slyc05G0018000.1 | Terpenoid | BAHD | medium | pass | BAHD__00048__sp_Q5M757_ZDH15_ARATH |
| Slyc05G0019130.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Slyc05G0019140.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Slyc05G0019150.1 | Terpenoid | BAHD | medium | pass | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Slyc05G0021150.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Slyc05G0021160.1 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Slyc05G0021500.1 | Terpenoid | BAHD | medium | pass | BAHD__00071__sp_Q9CAY3_GPAT5_ARATH |
| Slyc05G0024280.1 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Slyc06G0005250.1 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Slyc06G0009820.1 | Terpenoid | BAHD | medium | pass | BAHD__00031__sp_P0DO25_AT9_ACTDE |
| Slyc06G0009990.1 | Terpenoid | BAHD | medium | pass | BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF |
| Slyc06G0014690.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Slyc06G0017670.1 | Terpenoid | BAHD | medium | pass | BAHD__00096__sp_Q9XGY6_WAXS1_SIMCH |
| Slyc06G0018990.1 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Slyc06G0021230.1 | Terpenoid | BAHD | low | borderline | BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF |
| Slyc06G0022060.1 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Slyc06G0024210.1 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Slyc06G0024240.1 | Terpenoid | BAHD | low | borderline | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |
| Slyc06G0024380.1 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc06G0027630.1 | Terpenoid | BAHD | medium | pass | BAHD__00026__sp_O64811_SCP9_ARATH |
| Slyc06G0027640.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc06G0027650.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc06G0027660.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc07G0000630.1 | Terpenoid | BAHD | medium | pass | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Slyc07G0000840.1 | Terpenoid | BAHD | medium | pass | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Slyc07G0001050.1 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Slyc07G0001800.1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| Slyc07G0001810.1 | Terpenoid | BAHD | medium | pass | BAHD__00032__sp_P0DO84_AT_STRNX |
| Slyc07G0001930.1 | Terpenoid | BAHD | low | borderline | BAHD__00088__sp_Q9M7Z1_ODB2_ARATH |
| Slyc07G0002610.1 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| Slyc07G0003630.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Slyc07G0003640.1 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Slyc07G0004870.1 | Terpenoid | BAHD | medium | pass | BAHD__00012__sp_A1XWY7_CFAT_PETHY |