PlantSME Plant secondary metabolism enzyme database

Solanum pennellii (solanum_pennellii)

Imported from atlas release summary for Solanum pennellii.

1801
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 28.54% Alkaloid pathway 20.82% Phenylpropanoid pathway 20.1% Flavonoid pathway 14.27% Rosmarinic acid pathway 10.61% Steroid pathway 5.66%
Family Distribution
C4H 6.67% C3'H/CYP98A 6.39% BAHD 5.79% UGT 4.06% T3O 3.93% UFGT 3.93% 4CL 3.91% 7DLGT 3.87%
Other Families 61.44%
More Families (98)
CYP76 179 3.83% POD 170 3.63% IFS 166 3.55% F3H 140 2.99% F3'H/CYP75B 121 2.59% DWF4/CYP90B1 113 2.42% BR6OX2/CYP85A2 107 2.29% NMT 96 2.05% CODM/T6ODM 82 1.75% STR 79 1.69% CYP71 76 1.62% H6H 71 1.52% SMT1/SMT2/SMT3 70 1.5% CAD 58 1.24% TRI/TRII 57 1.22% TPS 45 0.96% LAC 44 0.94% TAT 44 0.94% CAS 43 0.92% GES 42 0.9% CSE 40 0.85% PAL 36 0.77% SLS 34 0.73% IFR 34 0.73% COMT 34 0.73% GS 32 0.68% T16H 32 0.68% PYKS 31 0.66% 7DLH 30 0.64% BBE 29 0.62% HCT 29 0.62% CYP90D1 29 0.62% FNS 27 0.58% G8O/G8H 26 0.56% IO 25 0.53% ANR 24 0.51% BR6OX1/CYP85A1 23 0.49% SGD 22 0.47% PMT 22 0.47% 16OMT 22 0.47% F3'5'H/CYP75A 22 0.47% F5H/CYP84A 21 0.45% RAS 21 0.45% ANS/LDOX 20 0.43% CPD/CYP90A1 20 0.43% TYDC_DDC 19 0.41% NCS 19 0.41% CCR 19 0.41% LAMT 17 0.36% CNMT 17 0.36% CYP51G1 17 0.36% 8HGO 16 0.34% SQS/FDFT1 13 0.28% ROT3/CYP90C1 13 0.28% DFR 12 0.26% CYP80B1 11 0.24% CCoAOMT 11 0.24% CPR 11 0.24% FPPS 11 0.24% MPO 10 0.21% TDC 10 0.21% HPPR 10 0.21% ISY 9 0.19% GGPPS 9 0.19% CHS 8 0.17% AACT 8 0.17% COR 7 0.15% ODC 7 0.15% SQE 7 0.15% DET2 7 0.15% MVD 6 0.13% HMGS 6 0.13% HMGR 6 0.13% XMT_MXMT_DXMT 5 0.11% CYP719 5 0.11% MVK 5 0.11% DXS 5 0.11% CHI 4 0.09% SMO1/SMO2 4 0.09% HYD1 4 0.09% PMK 4 0.09% CYP80F1 3 0.06% ADC 3 0.06% 6OMT_4OMT_SOMT 3 0.06% FLS 3 0.06% DWF5 3 0.06% DWF7 3 0.06% DWF1 2 0.04% FK 2 0.04% CMK/IspE 2 0.04% IDI 2 0.04% HDS/IspG 2 0.04% GPPS 2 0.04% CPI1 1 0.02% MCT/IspD 1 0.02% HDR/IspH 1 0.02% DXR 1 0.02% MDS/IspF 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 514 19 BAHD (198) View species results
Alkaloid pathway 375 22 7DLGT (87) View species results
Phenylpropanoid pathway 362 11 POD (163) View species results
Flavonoid pathway 257 10 UFGT (174) View species results
Rosmarinic acid pathway 191 7 C4H (89) View species results
Steroid pathway 102 13 SMT1/SMT2/SMT3 (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1868 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 321 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
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Gene Pathway Family Confidence Status Best Target
SOpen01G0035350.1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
SOpen01G0052130.1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
SOpen05G0030680.1 Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
SOpen05G0031070.1 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
SOpen06G0012590.1 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
SOpen09G0033440.1 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
SOpen12G0031900.1 Flavonoid CHS medium pass CHS__00003__sp_B0LDU6_PKS5_RUBID
SOpen12G0031910.1 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA