Solanum pennellii (solanum_pennellii)
Imported from atlas release summary for Solanum pennellii.
1801
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1801
Candidate Genes
C4H
6.67%
C3'H/CYP98A
6.39%
BAHD
5.79%
UGT
4.06%
T3O
3.93%
UFGT
3.93%
4CL
3.91%
7DLGT
3.87%
Other Families
61.44%
More Families (98)
CYP76
179
3.83%
POD
170
3.63%
IFS
166
3.55%
F3H
140
2.99%
F3'H/CYP75B
121
2.59%
DWF4/CYP90B1
113
2.42%
BR6OX2/CYP85A2
107
2.29%
NMT
96
2.05%
CODM/T6ODM
82
1.75%
STR
79
1.69%
CYP71
76
1.62%
H6H
71
1.52%
SMT1/SMT2/SMT3
70
1.5%
CAD
58
1.24%
TRI/TRII
57
1.22%
TPS
45
0.96%
LAC
44
0.94%
TAT
44
0.94%
CAS
43
0.92%
GES
42
0.9%
CSE
40
0.85%
PAL
36
0.77%
SLS
34
0.73%
IFR
34
0.73%
COMT
34
0.73%
GS
32
0.68%
T16H
32
0.68%
PYKS
31
0.66%
7DLH
30
0.64%
BBE
29
0.62%
HCT
29
0.62%
CYP90D1
29
0.62%
FNS
27
0.58%
G8O/G8H
26
0.56%
IO
25
0.53%
ANR
24
0.51%
BR6OX1/CYP85A1
23
0.49%
SGD
22
0.47%
PMT
22
0.47%
16OMT
22
0.47%
F3'5'H/CYP75A
22
0.47%
F5H/CYP84A
21
0.45%
RAS
21
0.45%
ANS/LDOX
20
0.43%
CPD/CYP90A1
20
0.43%
TYDC_DDC
19
0.41%
NCS
19
0.41%
CCR
19
0.41%
LAMT
17
0.36%
CNMT
17
0.36%
CYP51G1
17
0.36%
8HGO
16
0.34%
SQS/FDFT1
13
0.28%
ROT3/CYP90C1
13
0.28%
DFR
12
0.26%
CYP80B1
11
0.24%
CCoAOMT
11
0.24%
CPR
11
0.24%
FPPS
11
0.24%
MPO
10
0.21%
TDC
10
0.21%
HPPR
10
0.21%
ISY
9
0.19%
GGPPS
9
0.19%
CHS
8
0.17%
AACT
8
0.17%
COR
7
0.15%
ODC
7
0.15%
SQE
7
0.15%
DET2
7
0.15%
MVD
6
0.13%
HMGS
6
0.13%
HMGR
6
0.13%
XMT_MXMT_DXMT
5
0.11%
CYP719
5
0.11%
MVK
5
0.11%
DXS
5
0.11%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
HYD1
4
0.09%
PMK
4
0.09%
CYP80F1
3
0.06%
ADC
3
0.06%
6OMT_4OMT_SOMT
3
0.06%
FLS
3
0.06%
DWF5
3
0.06%
DWF7
3
0.06%
DWF1
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
IDI
2
0.04%
HDS/IspG
2
0.04%
GPPS
2
0.04%
CPI1
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 514 | 19 | BAHD (198) | View species results |
| Alkaloid pathway | 375 | 22 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 362 | 11 | POD (163) | View species results |
| Flavonoid pathway | 257 | 10 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (89) | View species results |
| Steroid pathway | 102 | 13 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1868 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 321 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GES
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SOpen01G0043650.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen01G0043660.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen01G0043670.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen01G0047290.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| SOpen01G0047300.1 | Alkaloid | GES | medium | pass | GES__00005__sp_Q308N0_GRNL6_PERFR |
| SOpen01G0047310.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| SOpen01G0047320.1 | Alkaloid | GES | medium | pass | GES__00006__sp_Q4JHG3_GRNLC_PERFH |
| SOpen01G0047340.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen02G0020280.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen02G0023610.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen02G0023650.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen02G0023660.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen03G0001550.1 | Alkaloid | GES | medium | pass | GES__00010__sp_Q93YV0_GES_ARATH |
| SOpen03G0030270.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen04G0000130.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen04G0021990.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen04G0023210.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen05G0023370.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| SOpen06G0015310.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0018970.1 | Alkaloid | GES | low | borderline | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019030.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019040.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019050.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019150.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019150.2 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0019300.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen06G0034610.1 | Alkaloid | GES | low | borderline | GES__00011__sp_R9QMR5_ATERP_PINBN |
| SOpen07G0003610.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen07G0024750.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen07G0024780.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen07G0033820.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen07G0033820.2 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen07G0033820.3 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen08G0000690.1 | Alkaloid | GES | low | borderline | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen08G0000690.2 | Alkaloid | GES | low | borderline | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen08G0000700.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen08G0000730.1 | Alkaloid | GES | medium | pass | GES__00008__sp_Q84ZW8_ACSS_MAIZE |
| SOpen09G0009750.1 | Alkaloid | GES | medium | pass | GES__00009__sp_Q8GUE4_GERS_CINTE |
| SOpen09G0034370.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |
| SOpen10G0000380.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| SOpen10G0000400.1 | Alkaloid | GES | medium | pass | GES__00001__sp_A0A7G5KLV3_TPS4_CANOD |
| SOpen12G0001520.1 | Alkaloid | GES | medium | pass | GES__00004__sp_E2E2N7_BCGS_ORIVU |