Solanum pennellii (solanum_pennellii)
Imported from atlas release summary for Solanum pennellii.
1801
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1801
Candidate Genes
C4H
6.67%
C3'H/CYP98A
6.39%
BAHD
5.79%
UGT
4.06%
T3O
3.93%
UFGT
3.93%
4CL
3.91%
7DLGT
3.87%
Other Families
61.44%
More Families (98)
CYP76
179
3.83%
POD
170
3.63%
IFS
166
3.55%
F3H
140
2.99%
F3'H/CYP75B
121
2.59%
DWF4/CYP90B1
113
2.42%
BR6OX2/CYP85A2
107
2.29%
NMT
96
2.05%
CODM/T6ODM
82
1.75%
STR
79
1.69%
CYP71
76
1.62%
H6H
71
1.52%
SMT1/SMT2/SMT3
70
1.5%
CAD
58
1.24%
TRI/TRII
57
1.22%
TPS
45
0.96%
LAC
44
0.94%
TAT
44
0.94%
CAS
43
0.92%
GES
42
0.9%
CSE
40
0.85%
PAL
36
0.77%
SLS
34
0.73%
IFR
34
0.73%
COMT
34
0.73%
GS
32
0.68%
T16H
32
0.68%
PYKS
31
0.66%
7DLH
30
0.64%
BBE
29
0.62%
HCT
29
0.62%
CYP90D1
29
0.62%
FNS
27
0.58%
G8O/G8H
26
0.56%
IO
25
0.53%
ANR
24
0.51%
BR6OX1/CYP85A1
23
0.49%
SGD
22
0.47%
PMT
22
0.47%
16OMT
22
0.47%
F3'5'H/CYP75A
22
0.47%
F5H/CYP84A
21
0.45%
RAS
21
0.45%
ANS/LDOX
20
0.43%
CPD/CYP90A1
20
0.43%
TYDC_DDC
19
0.41%
NCS
19
0.41%
CCR
19
0.41%
LAMT
17
0.36%
CNMT
17
0.36%
CYP51G1
17
0.36%
8HGO
16
0.34%
SQS/FDFT1
13
0.28%
ROT3/CYP90C1
13
0.28%
DFR
12
0.26%
CYP80B1
11
0.24%
CCoAOMT
11
0.24%
CPR
11
0.24%
FPPS
11
0.24%
MPO
10
0.21%
TDC
10
0.21%
HPPR
10
0.21%
ISY
9
0.19%
GGPPS
9
0.19%
CHS
8
0.17%
AACT
8
0.17%
COR
7
0.15%
ODC
7
0.15%
SQE
7
0.15%
DET2
7
0.15%
MVD
6
0.13%
HMGS
6
0.13%
HMGR
6
0.13%
XMT_MXMT_DXMT
5
0.11%
CYP719
5
0.11%
MVK
5
0.11%
DXS
5
0.11%
CHI
4
0.09%
SMO1/SMO2
4
0.09%
HYD1
4
0.09%
PMK
4
0.09%
CYP80F1
3
0.06%
ADC
3
0.06%
6OMT_4OMT_SOMT
3
0.06%
FLS
3
0.06%
DWF5
3
0.06%
DWF7
3
0.06%
DWF1
2
0.04%
FK
2
0.04%
CMK/IspE
2
0.04%
IDI
2
0.04%
HDS/IspG
2
0.04%
GPPS
2
0.04%
CPI1
1
0.02%
MCT/IspD
1
0.02%
HDR/IspH
1
0.02%
DXR
1
0.02%
MDS/IspF
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 514 | 19 | BAHD (198) | View species results |
| Alkaloid pathway | 375 | 22 | 7DLGT (87) | View species results |
| Phenylpropanoid pathway | 362 | 11 | POD (163) | View species results |
| Flavonoid pathway | 257 | 10 | UFGT (174) | View species results |
| Rosmarinic acid pathway | 191 | 7 | C4H (89) | View species results |
| Steroid pathway | 102 | 13 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1868 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 321 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SOpen01G0001220.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| SOpen01G0001870.1 | Alkaloid | NMT | medium | pass | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| SOpen01G0029330.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| SOpen01G0030180.1 | Alkaloid | NMT | medium | pass | NMT__00069__sp_Q9ZSM8_EZA1_ARATH |
| SOpen01G0030290.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen01G0033530.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SOpen01G0036630.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| SOpen01G0038630.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen01G0039280.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SOpen01G0052880.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SOpen02G0005280.1 | Alkaloid | NMT | low | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SOpen02G0033660.1 | Alkaloid | NMT | medium | pass | NMT__00021__sp_O64827_SUVR5_ARATH |
| SOpen02G0036780.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SOpen02G0036780.2 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SOpen02G0038200.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| SOpen03G0005220.1 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SOpen03G0005220.2 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SOpen03G0005220.3 | Alkaloid | NMT | medium | pass | NMT__00016__sp_F4JNX3_CMKMT_ARATH |
| SOpen03G0007460.1 | Alkaloid | NMT | medium | pass | NMT__00025__sp_P93831_CLF_ARATH |
| SOpen03G0008610.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SOpen03G0008610.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SOpen03G0021670.1 | Alkaloid | NMT | medium | pass | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| SOpen03G0022180.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen03G0023610.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| SOpen03G0023620.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| SOpen03G0023660.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| SOpen03G0026930.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| SOpen03G0030770.1 | Alkaloid | NMT | medium | pass | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen03G0036690.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SOpen03G0036690.2 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |
| SOpen04G0003040.1 | Alkaloid | NMT | medium | borderline | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| SOpen04G0024330.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SOpen04G0024330.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SOpen04G0024340.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| SOpen04G0024730.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| SOpen05G0003500.1 | Alkaloid | NMT | medium | borderline | NMT__00053__sp_Q9C6B9_PEAM3_ARATH |
| SOpen05G0006890.1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| SOpen05G0006890.2 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| SOpen05G0006900.1 | Alkaloid | NMT | medium | pass | NMT__00030__sp_Q43088_RBCMT_PEA |
| SOpen05G0031730.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| SOpen06G0001800.1 | Alkaloid | NMT | medium | borderline | NMT__00011__sp_A9X7L0_ANMT_RUTGR |
| SOpen06G0001990.1 | Alkaloid | NMT | medium | pass | NMT__00055__sp_Q9FNC7_SUVR2_ARATH |
| SOpen06G0019060.1 | Alkaloid | NMT | medium | pass | NMT__00028__sp_Q2LAE1_ASHH2_ARATH |
| SOpen06G0019790.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SOpen06G0019790.2 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| SOpen06G0020100.1 | Alkaloid | NMT | medium | pass | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| SOpen06G0023230.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen06G0024340.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| SOpen06G0024720.1 | Alkaloid | NMT | medium | pass | NMT__00061__sp_Q9SAH5_PLMT_ARATH |
| SOpen06G0025240.1 | Alkaloid | NMT | medium | borderline | NMT__00059__sp_Q9M571_PEAMT_SPIOL |