PlantSME Plant secondary metabolism enzyme database

Solanum tuberosum (solanum_tuberosum)

Imported from atlas release summary for Solanum tuberosum.

1621
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.08% Alkaloid pathway 22.52% Phenylpropanoid pathway 16.22% Flavonoid pathway 13.88% Rosmarinic acid pathway 10.3% Steroid pathway 5.0%
Family Distribution
C4H 7.45% C3'H/CYP98A 6.6% BAHD 4.78% UGT 4.4% T3O 4.24% 7DLGT 4.12% UFGT 4.05% CYP76 4.03%
Other Families 60.33%
More Families (93)
IFS 171 4.0% 4CL 135 3.16% F3H 132 3.09% BR6OX2/CYP85A2 119 2.79% F3'H/CYP75B 118 2.76% POD 106 2.48% H6H 94 2.2% CYP71 92 2.15% DWF4/CYP90B1 87 2.04% CODM/T6ODM 76 1.78% TPS 71 1.66% NMT 69 1.62% GES 59 1.38% TAT 52 1.22% STR 45 1.05% TRI/TRII 45 1.05% SMT1/SMT2/SMT3 43 1.01% CAS 40 0.94% T16H 39 0.91% IFR 38 0.89% CYP90D1 37 0.87% ANS/LDOX 36 0.84% CAD 36 0.84% F5H/CYP84A 35 0.82% LAC 34 0.8% COMT 33 0.77% SLS 32 0.75% G8O/G8H 30 0.7% CSE 30 0.7% FNS 29 0.68% 16OMT 28 0.66% PYKS 27 0.63% F3'5'H/CYP75A 27 0.63% CYP51G1 27 0.63% 7DLH 26 0.61% IO 24 0.56% GS 22 0.52% NCS 21 0.49% BBE 18 0.42% PAL 18 0.42% CCR 18 0.42% CPD/CYP90A1 18 0.42% FPPS 18 0.42% HCT 17 0.4% BR6OX1/CYP85A1 17 0.4% 8HGO 14 0.33% COR 14 0.33% LAMT 14 0.33% TYDC_DDC 14 0.33% SGD 13 0.3% ANR 13 0.3% CHS 13 0.3% SQS/FDFT1 13 0.3% TDC 11 0.26% DFR 11 0.26% HMGR 11 0.26% CYP80B1 10 0.23% RAS 10 0.23% AACT 9 0.21% PMT 8 0.19% MPO 8 0.19% ROT3/CYP90C1 8 0.19% SMO1/SMO2 7 0.16% GGPPS 7 0.16% CYP719 6 0.14% CCoAOMT 6 0.14% SQE 6 0.14% FLS 5 0.12% CPR 5 0.12% DET2 5 0.12% ODC 4 0.09% DXS 4 0.09% MCT/IspD 4 0.09% ADC 3 0.07% CNMT 3 0.07% MVD 3 0.07% XMT_MXMT_DXMT 2 0.05% ISY 2 0.05% CHI 2 0.05% FK 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% MVK 2 0.05% HMGS 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CYP80F1 1 0.02% DWF7 1 0.02% CPI1 1 0.02% DWF1 1 0.02% HYD1 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 520 15 UGT (179) View species results
Alkaloid pathway 365 24 7DLGT (90) View species results
Phenylpropanoid pathway 263 11 POD (104) View species results
Flavonoid pathway 225 13 UFGT (150) View species results
Rosmarinic acid pathway 167 6 C4H (101) View species results
Steroid pathway 81 11 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1877 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Gene Pathway Family Confidence Status Best Target
Stub01G0034700.1 Alkaloid CYP80B1 low borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
Stub01G0034710.1 Alkaloid CYP80B1 low borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
Stub02G0028310.2 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
Stub04G0028250.2 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
Stub04G0030370.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
Stub04G0030370.2 Alkaloid CYP80B1 medium pass CYP80B1__00002__sp_O64900_C80B2_ESCCA
Stub08G0010800.1 Alkaloid CYP80B1 medium borderline CYP80B1__00002__sp_O64900_C80B2_ESCCA
Stub10G0002750.2 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
Stub10G0002750.4 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
Stub11G0018500.2 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA