Solanum tuberosum (solanum_tuberosum)
Imported from atlas release summary for Solanum tuberosum.
1621
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1621
Candidate Genes
C4H
7.45%
C3'H/CYP98A
6.6%
BAHD
4.78%
UGT
4.4%
T3O
4.24%
7DLGT
4.12%
UFGT
4.05%
CYP76
4.03%
Other Families
60.33%
More Families (93)
IFS
171
4.0%
4CL
135
3.16%
F3H
132
3.09%
BR6OX2/CYP85A2
119
2.79%
F3'H/CYP75B
118
2.76%
POD
106
2.48%
H6H
94
2.2%
CYP71
92
2.15%
DWF4/CYP90B1
87
2.04%
CODM/T6ODM
76
1.78%
TPS
71
1.66%
NMT
69
1.62%
GES
59
1.38%
TAT
52
1.22%
STR
45
1.05%
TRI/TRII
45
1.05%
SMT1/SMT2/SMT3
43
1.01%
CAS
40
0.94%
T16H
39
0.91%
IFR
38
0.89%
CYP90D1
37
0.87%
ANS/LDOX
36
0.84%
CAD
36
0.84%
F5H/CYP84A
35
0.82%
LAC
34
0.8%
COMT
33
0.77%
SLS
32
0.75%
G8O/G8H
30
0.7%
CSE
30
0.7%
FNS
29
0.68%
16OMT
28
0.66%
PYKS
27
0.63%
F3'5'H/CYP75A
27
0.63%
CYP51G1
27
0.63%
7DLH
26
0.61%
IO
24
0.56%
GS
22
0.52%
NCS
21
0.49%
BBE
18
0.42%
PAL
18
0.42%
CCR
18
0.42%
CPD/CYP90A1
18
0.42%
FPPS
18
0.42%
HCT
17
0.4%
BR6OX1/CYP85A1
17
0.4%
8HGO
14
0.33%
COR
14
0.33%
LAMT
14
0.33%
TYDC_DDC
14
0.33%
SGD
13
0.3%
ANR
13
0.3%
CHS
13
0.3%
SQS/FDFT1
13
0.3%
TDC
11
0.26%
DFR
11
0.26%
HMGR
11
0.26%
CYP80B1
10
0.23%
RAS
10
0.23%
AACT
9
0.21%
PMT
8
0.19%
MPO
8
0.19%
ROT3/CYP90C1
8
0.19%
SMO1/SMO2
7
0.16%
GGPPS
7
0.16%
CYP719
6
0.14%
CCoAOMT
6
0.14%
SQE
6
0.14%
FLS
5
0.12%
CPR
5
0.12%
DET2
5
0.12%
ODC
4
0.09%
DXS
4
0.09%
MCT/IspD
4
0.09%
ADC
3
0.07%
CNMT
3
0.07%
MVD
3
0.07%
XMT_MXMT_DXMT
2
0.05%
ISY
2
0.05%
CHI
2
0.05%
FK
2
0.05%
HDS/IspG
2
0.05%
IDI
2
0.05%
MVK
2
0.05%
HMGS
2
0.05%
6OMT_4OMT_SOMT
1
0.02%
CYP80F1
1
0.02%
DWF7
1
0.02%
CPI1
1
0.02%
DWF1
1
0.02%
HYD1
1
0.02%
GPPS
1
0.02%
CMK/IspE
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 520 | 15 | UGT (179) | View species results |
| Alkaloid pathway | 365 | 24 | 7DLGT (90) | View species results |
| Phenylpropanoid pathway | 263 | 11 | POD (104) | View species results |
| Flavonoid pathway | 225 | 13 | UFGT (150) | View species results |
| Rosmarinic acid pathway | 167 | 6 | C4H (101) | View species results |
| Steroid pathway | 81 | 11 | CAS (30) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1877 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 231 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Stub02G0028460.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub03G0019900.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub03G0019910.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub03G0021020.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Stub04G0011290.2 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub04G0032140.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub05G0001560.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub05G0011630.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Stub07G0024400.1 | Alkaloid | NCS | low | borderline | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Stub08G0008120.13 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub08G0015430.1 | Alkaloid | NCS | medium | pass | NCS__00003__sp_Q4QTJ1_NCS2_PAPSO |
| Stub09G0016690.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub10G0027120.3 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0002490.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0002490.2 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0002490.3 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0002490.4 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0002520.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0018520.1 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0018520.2 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |
| Stub11G0018570.3 | Alkaloid | NCS | medium | borderline | NCS__00001__sp_A2A1A0_NCS1_COPJA |