PlantSME Plant secondary metabolism enzyme database

Solanum tuberosum (solanum_tuberosum)

Imported from atlas release summary for Solanum tuberosum.

1621
Candidate Genes
101
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.08% Alkaloid pathway 22.52% Phenylpropanoid pathway 16.22% Flavonoid pathway 13.88% Rosmarinic acid pathway 10.3% Steroid pathway 5.0%
Family Distribution
C4H 7.45% C3'H/CYP98A 6.6% BAHD 4.78% UGT 4.4% T3O 4.24% 7DLGT 4.12% UFGT 4.05% CYP76 4.03%
Other Families 60.33%
More Families (93)
IFS 171 4.0% 4CL 135 3.16% F3H 132 3.09% BR6OX2/CYP85A2 119 2.79% F3'H/CYP75B 118 2.76% POD 106 2.48% H6H 94 2.2% CYP71 92 2.15% DWF4/CYP90B1 87 2.04% CODM/T6ODM 76 1.78% TPS 71 1.66% NMT 69 1.62% GES 59 1.38% TAT 52 1.22% STR 45 1.05% TRI/TRII 45 1.05% SMT1/SMT2/SMT3 43 1.01% CAS 40 0.94% T16H 39 0.91% IFR 38 0.89% CYP90D1 37 0.87% ANS/LDOX 36 0.84% CAD 36 0.84% F5H/CYP84A 35 0.82% LAC 34 0.8% COMT 33 0.77% SLS 32 0.75% G8O/G8H 30 0.7% CSE 30 0.7% FNS 29 0.68% 16OMT 28 0.66% PYKS 27 0.63% F3'5'H/CYP75A 27 0.63% CYP51G1 27 0.63% 7DLH 26 0.61% IO 24 0.56% GS 22 0.52% NCS 21 0.49% BBE 18 0.42% PAL 18 0.42% CCR 18 0.42% CPD/CYP90A1 18 0.42% FPPS 18 0.42% HCT 17 0.4% BR6OX1/CYP85A1 17 0.4% 8HGO 14 0.33% COR 14 0.33% LAMT 14 0.33% TYDC_DDC 14 0.33% SGD 13 0.3% ANR 13 0.3% CHS 13 0.3% SQS/FDFT1 13 0.3% TDC 11 0.26% DFR 11 0.26% HMGR 11 0.26% CYP80B1 10 0.23% RAS 10 0.23% AACT 9 0.21% PMT 8 0.19% MPO 8 0.19% ROT3/CYP90C1 8 0.19% SMO1/SMO2 7 0.16% GGPPS 7 0.16% CYP719 6 0.14% CCoAOMT 6 0.14% SQE 6 0.14% FLS 5 0.12% CPR 5 0.12% DET2 5 0.12% ODC 4 0.09% DXS 4 0.09% MCT/IspD 4 0.09% ADC 3 0.07% CNMT 3 0.07% MVD 3 0.07% XMT_MXMT_DXMT 2 0.05% ISY 2 0.05% CHI 2 0.05% FK 2 0.05% HDS/IspG 2 0.05% IDI 2 0.05% MVK 2 0.05% HMGS 2 0.05% 6OMT_4OMT_SOMT 1 0.02% CYP80F1 1 0.02% DWF7 1 0.02% CPI1 1 0.02% DWF1 1 0.02% HYD1 1 0.02% GPPS 1 0.02% CMK/IspE 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 520 15 UGT (179) View species results
Alkaloid pathway 365 24 7DLGT (90) View species results
Phenylpropanoid pathway 263 11 POD (104) View species results
Flavonoid pathway 225 13 UFGT (150) View species results
Rosmarinic acid pathway 167 6 C4H (101) View species results
Steroid pathway 81 11 CAS (30) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1877 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 231 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Stub08G0022050.2 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Stub08G0026260.1 Alkaloid NMT medium pass NMT__00035__sp_Q6K431_TRX1_ORYSJ
Stub09G0000720.2 Alkaloid NMT medium pass NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Stub09G0004030.2 Alkaloid NMT low borderline NMT__00056__sp_Q9FNE9_ATXR6_ARATH
Stub10G0005050.1 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Stub10G0005050.2 Alkaloid NMT medium pass NMT__00047__sp_Q8VZJ1_ATXR5_ARATH
Stub10G0015600.1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Stub10G0015620.1 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Stub10G0015630.2 Alkaloid NMT medium pass NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Stub10G0019590.1 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
Stub10G0019590.2 Alkaloid NMT medium pass NMT__00030__sp_Q43088_RBCMT_PEA
Stub10G0027300.1 Alkaloid NMT low borderline NMT__00035__sp_Q6K431_TRX1_ORYSJ
Stub11G0006810.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Stub11G0006830.1 Alkaloid NMT medium borderline NMT__00059__sp_Q9M571_PEAMT_SPIOL
Stub11G0017060.1 Alkaloid NMT medium borderline NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB
Stub12G0021490.2 Alkaloid NMT medium borderline NMT__00070__sp_W5U2K2_NMT_CATRO
Stub12G0023820.1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Stub12G0023960.1 Alkaloid NMT medium pass NMT__00040__sp_Q84WW6_ASHH1_ARATH
Stub12G0023990.1 Alkaloid NMT low borderline NMT__00040__sp_Q84WW6_ASHH1_ARATH