PlantSME Plant secondary metabolism enzyme database

Spirogloea muscicola (spirogloea_muscicola)

Imported from atlas release summary for Spirogloea muscicola.

434
Candidate Genes
96
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.87% Alkaloid pathway 26.04% Phenylpropanoid pathway 20.97% Steroid pathway 10.6% Rosmarinic acid pathway 4.61% Flavonoid pathway 3.92%
Family Distribution
BAHD 10.92% 4CL 10.84% NMT 6.05% POD 4.71% IFR 4.12% STR 3.7% GS 3.53% SMT1/SMT2/SMT3 2.94%
Other Families 53.19%
More Families (88)
CYP71 35 2.94% CSE 30 2.52% C3'H/CYP98A 30 2.52% C4H 28 2.35% CAD 22 1.85% CNMT 20 1.68% CYP76 20 1.68% TRI/TRII 19 1.6% SGD 16 1.34% AACT 15 1.26% IFS 14 1.18% FNS 13 1.09% CPR 13 1.09% T3O 11 0.92% PYKS 11 0.92% COR 11 0.92% DFR 10 0.84% CAS 10 0.84% SQS/FDFT1 10 0.84% BR6OX2/CYP85A2 10 0.84% DWF4/CYP90B1 10 0.84% MVK 10 0.84% F3H 9 0.76% TAT 9 0.76% GGPPS 9 0.76% SLS 8 0.67% CPD/CYP90A1 8 0.67% SMO1/SMO2 8 0.67% DET2 7 0.59% 8HGO 6 0.5% PMT 6 0.5% PAL 6 0.5% CHS 6 0.5% CCoAOMT 6 0.5% COMT 6 0.5% FPPS 6 0.5% MVD 6 0.5% IO 5 0.42% 6OMT_4OMT_SOMT 5 0.42% CHI 5 0.42% F3'5'H/CYP75A 5 0.42% LAC 5 0.42% RAS 5 0.42% HDR/IspH 5 0.42% CYP719 4 0.34% H6H 4 0.34% ISY 4 0.34% ANR 4 0.34% CCR 4 0.34% F5H/CYP84A 4 0.34% CYP51G1 4 0.34% HYD1 4 0.34% ODC 3 0.25% NCS 3 0.25% G8O/G8H 3 0.25% MPO 3 0.25% CODM/T6ODM 3 0.25% ADC 3 0.25% CYP80B1 3 0.25% T16H 3 0.25% TDC 3 0.25% F3'H/CYP75B 3 0.25% HPPR 3 0.25% DWF1 3 0.25% ROT3/CYP90C1 3 0.25% DWF7 3 0.25% FK 3 0.25% DWF5 3 0.25% CPI1 3 0.25% UGT 3 0.25% HDS/IspG 3 0.25% PMK 3 0.25% HMGR 3 0.25% HMGS 3 0.25% DXS 3 0.25% CMK/IspE 3 0.25% IDI 3 0.25% MDS/IspF 3 0.25% CYP80F1 2 0.17% XMT_MXMT_DXMT 2 0.17% 7DLGT 2 0.17% UFGT 2 0.17% BBE 1 0.08% LAMT 1 0.08% FLS 1 0.08% BR6OX1/CYP85A1 1 0.08% CYP90D1 1 0.08% GPPS 1 0.08%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 147 15 BAHD (83) View species results
Alkaloid pathway 113 15 NMT (34) View species results
Phenylpropanoid pathway 91 7 POD (48) View species results
Steroid pathway 46 9 SMT1/SMT2/SMT3 (14) View species results
Rosmarinic acid pathway 20 4 CPR (10) View species results
Flavonoid pathway 17 6 4CL (4) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 215 BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 2 135 BAHD, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GGPPS
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Gene Pathway Family Confidence Status Best Target
Smuss1140021380 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Smuss1230029230 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Smuss1330040230 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Smuss1680068270 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Smuss2360114310 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Smuss270130690 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Smuss420182620 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH
Smuss740238660 Terpenoid GGPPS medium borderline GGPPS__00002__sp_Q9SLG2_GGPP4_ARATH
Smuss810249480 Terpenoid GGPPS medium borderline GGPPS__00001__sp_Q8S948_SPS1_ARATH