Spirogloea muscicola (spirogloea_muscicola)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Terpenoid pathway 33.87% Alkaloid pathway 26.04% Phenylpropanoid pathway 20.97% Steroid pathway 10.6% Rosmarinic acid pathway 4.61% Flavonoid pathway 3.92%

Family Distribution

434 Candidate Genes

BAHD 10.92% 4CL 10.84% NMT 6.05% POD 4.71% IFR 4.12% STR 3.7% GS 3.53% SMT1/SMT2/SMT3 2.94%

Other Families 53.19%

More Families (88)

CYP71 35 2.94% CSE 30 2.52% C3'H/CYP98A 30 2.52% C4H 28 2.35% CAD 22 1.85% CNMT 20 1.68% CYP76 20 1.68% TRI/TRII 19 1.6% SGD 16 1.34% AACT 15 1.26% IFS 14 1.18% FNS 13 1.09% CPR 13 1.09% T3O 11 0.92% PYKS 11 0.92% COR 11 0.92% DFR 10 0.84% CAS 10 0.84% SQS/FDFT1 10 0.84% BR6OX2/CYP85A2 10 0.84% DWF4/CYP90B1 10 0.84% MVK 10 0.84% F3H 9 0.76% TAT 9 0.76% GGPPS 9 0.76% SLS 8 0.67% CPD/CYP90A1 8 0.67% SMO1/SMO2 8 0.67% DET2 7 0.59% 8HGO 6 0.5% PMT 6 0.5% PAL 6 0.5% CHS 6 0.5% CCoAOMT 6 0.5% COMT 6 0.5% FPPS 6 0.5% MVD 6 0.5% IO 5 0.42% 6OMT_4OMT_SOMT 5 0.42% CHI 5 0.42% F3'5'H/CYP75A 5 0.42% LAC 5 0.42% RAS 5 0.42% HDR/IspH 5 0.42% CYP719 4 0.34% H6H 4 0.34% ISY 4 0.34% ANR 4 0.34% CCR 4 0.34% F5H/CYP84A 4 0.34% CYP51G1 4 0.34% HYD1 4 0.34% ODC 3 0.25% NCS 3 0.25% G8O/G8H 3 0.25% MPO 3 0.25% CODM/T6ODM 3 0.25% ADC 3 0.25% CYP80B1 3 0.25% T16H 3 0.25% TDC 3 0.25% F3'H/CYP75B 3 0.25% HPPR 3 0.25% DWF1 3 0.25% ROT3/CYP90C1 3 0.25% DWF7 3 0.25% FK 3 0.25% DWF5 3 0.25% CPI1 3 0.25% UGT 3 0.25% HDS/IspG 3 0.25% PMK 3 0.25% HMGR 3 0.25% HMGS 3 0.25% DXS 3 0.25% CMK/IspE 3 0.25% IDI 3 0.25% MDS/IspF 3 0.25% CYP80F1 2 0.17% XMT_MXMT_DXMT 2 0.17% 7DLGT 2 0.17% UFGT 2 0.17% BBE 1 0.08% LAMT 1 0.08% FLS 1 0.08% BR6OX1/CYP85A1 1 0.08% CYP90D1 1 0.08% GPPS 1 0.08%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Terpenoid pathway	147	15	BAHD (83)	View species results
Alkaloid pathway	113	15	NMT (34)	View species results
Phenylpropanoid pathway	91	7	POD (48)	View species results
Steroid pathway	46	9	SMT1/SMT2/SMT3 (14)	View species results
Rosmarinic acid pathway	20	4	CPR (10)	View species results
Flavonoid pathway	17	6	4CL (4)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	215	BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	2	135	BAHD, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: NMT

Gene	Pathway	Family	Confidence	Status	Best Target
Smuss40177870	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Smuss420183570	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Smuss4250184210	Alkaloid	NMT	low	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Smuss490195510	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Smuss4940196670	Alkaloid	NMT	medium	pass	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Smuss50197450	Alkaloid	NMT	medium	pass	NMT__00039__sp_Q84W92_ANM13_ARATH
Smuss60217150	Alkaloid	NMT	medium	pass	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Smuss690229680	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Smuss70232490	Alkaloid	NMT	medium	borderline	NMT__00023__sp_O82210_ANM12_ARATH
Smuss70232560	Alkaloid	NMT	medium	borderline	NMT__00066__sp_Q9SU94_ANM11_ARATH
Smuss7040234000	Alkaloid	NMT	low	borderline	NMT__00046__sp_Q8VZ17_SUVH6_ARATH
Smuss720236330	Alkaloid	NMT	low	borderline	NMT__00017__sp_F4K1J4_ATXR7_ARATH
Smuss740238400	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
Smuss740238730	Alkaloid	NMT	low	borderline	NMT__00030__sp_Q43088_RBCMT_PEA
Smuss750239810	Alkaloid	NMT	medium	borderline	NMT__00015__sp_C8YTM5_PEAM2_WHEAT
Smuss780243160	Alkaloid	NMT	low	borderline	NMT__00060__sp_Q9MAT5_ANM10_ARATH
Smuss80246110	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Smuss80246410	Alkaloid	NMT	low	borderline	NMT__00016__sp_F4JNX3_CMKMT_ARATH
Smuss850253790	Alkaloid	NMT	low	borderline	NMT__00035__sp_Q6K431_TRX1_ORYSJ
Smuss930265280	Alkaloid	NMT	medium	pass	NMT__00060__sp_Q9MAT5_ANM10_ARATH
Smuss940266120	Alkaloid	NMT	medium	pass	NMT__00069__sp_Q9ZSM8_EZA1_ARATH
Smuss990271000	Alkaloid	NMT	low	borderline	NMT__00028__sp_Q2LAE1_ASHH2_ARATH