PlantSME Plant secondary metabolism enzyme database

Takakia lepidozioides (takakia_lepidozioides)

Imported from atlas release summary for Takakia lepidozioides.

819
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Current group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Algae
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 23.93% Phenylpropanoid pathway 22.59% Alkaloid pathway 21.0% Flavonoid pathway 14.16% Rosmarinic acid pathway 13.19% Steroid pathway 5.13%
Family Distribution
C4H 7.18% C3'H/CYP98A 6.92% PAL 4.99% BAHD 4.99% IFS 4.79% CYP76 4.47% POD 3.95% 4CL 3.33%
Other Families 59.37%
More Families (96)
T3O 61 3.17% DWF4/CYP90B1 60 3.12% NMT 58 3.02% UGT 50 2.6% UFGT 48 2.5% 7DLGT 45 2.34% STR 41 2.13% BR6OX2/CYP85A2 39 2.03% F3'H/CYP75B 33 1.72% IFR 30 1.56% GS 29 1.51% PYKS 27 1.4% F3H 27 1.4% COMT 23 1.2% IO 22 1.14% T16H 21 1.09% CAD 21 1.09% RAS 20 1.04% CYP71 20 1.04% TRI/TRII 19 0.99% CYP90D1 18 0.94% 7DLH 17 0.88% CODM/T6ODM 17 0.88% SGD 15 0.78% SLS 15 0.78% CHS 15 0.78% SMT1/SMT2/SMT3 15 0.78% 16OMT 13 0.68% HCT 13 0.68% CAS 13 0.68% PMT 12 0.62% H6H 12 0.62% CSE 12 0.62% BR6OX1/CYP85A1 11 0.57% LAC 10 0.52% ROT3/CYP90C1 10 0.52% G8O/G8H 9 0.47% 8HGO 9 0.47% FNS 9 0.47% F3'5'H/CYP75A 9 0.47% CYP719 8 0.42% COR 7 0.36% CNMT 7 0.36% ANR 7 0.36% CPD/CYP90A1 7 0.36% NCS 6 0.31% CYP80B1 6 0.31% DFR 6 0.31% CCR 6 0.31% CYP51G1 6 0.31% DET2 6 0.31% SQS/FDFT1 6 0.31% DXS 6 0.31% AACT 6 0.31% GES 5 0.26% LAMT 5 0.26% F5H/CYP84A 5 0.26% CPR 5 0.26% HYD1 5 0.26% TDC 4 0.21% ADC 4 0.21% TAT 4 0.21% DWF5 4 0.21% GGPPS 4 0.21% FPPS 4 0.21% TPS 4 0.21% TYDC_DDC 3 0.16% BBE 3 0.16% ANS/LDOX 3 0.16% SMO1/SMO2 3 0.16% DWF7 3 0.16% MVD 3 0.16% MVK 3 0.16% CCoAOMT 2 0.1% DWF1 2 0.1% FK 2 0.1% MDS/IspF 2 0.1% HMGR 2 0.1% PMK 2 0.1% ISY 1 0.05% ODC 1 0.05% 6OMT_4OMT_SOMT 1 0.05% MPO 1 0.05% XMT_MXMT_DXMT 1 0.05% FLS 1 0.05% CHI 1 0.05% HPPR 1 0.05% CPI1 1 0.05% SQE 1 0.05% DXR 1 0.05% MCT/IspD 1 0.05% CMK/IspE 1 0.05% HDS/IspG 1 0.05% HDR/IspH 1 0.05% HMGS 1 0.05% IDI 1 0.05%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 196 19 BAHD (75) View species results
Phenylpropanoid pathway 185 10 POD (75) View species results
Alkaloid pathway 172 17 7DLGT (34) View species results
Flavonoid pathway 116 8 UFGT (45) View species results
Rosmarinic acid pathway 108 7 C4H (46) View species results
Steroid pathway 42 12 CAS (12) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 826 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 129 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CODM/T6ODM
Reset
Gene Pathway Family Confidence Status
TlepHiC_scaffold_20030640 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20056360 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20056370 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20072990 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20073000 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20078410 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_20083130 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40112530 Alkaloid CODM/T6ODM low borderline
TlepHiC_scaffold_40118030 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40124710 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40127140 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40127160 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40134430 Alkaloid CODM/T6ODM low borderline
TlepHiC_scaffold_40143310 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_40155220 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_60226960 Alkaloid CODM/T6ODM medium borderline
TlepHiC_scaffold_60237530 Alkaloid CODM/T6ODM low borderline