PlantSME Plant secondary metabolism enzyme database

Tetraphis pellucida (tetraphis_pellucida)

Imported from atlas release summary for Tetraphis pellucida.

693
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.69% Terpenoid pathway 23.81% Alkaloid pathway 20.2% Flavonoid pathway 14.72% Rosmarinic acid pathway 9.81% Steroid pathway 5.77%
Family Distribution
C4H 6.42% POD 6.08% C3'H/CYP98A 5.97% NMT 5.23% BAHD 4.95% CYP76 4.28% 4CL 4.05% IFS 3.6%
Other Families 59.43%
More Families (95)
UGT 52 2.93% PAL 51 2.87% UFGT 50 2.81% 7DLGT 49 2.76% T3O 46 2.59% F3H 46 2.59% BR6OX2/CYP85A2 44 2.48% STR 42 2.36% IFR 38 2.14% GS 32 1.8% DWF4/CYP90B1 29 1.63% CODM/T6ODM 28 1.58% H6H 24 1.35% F3'H/CYP75B 22 1.24% T16H 21 1.18% PYKS 21 1.18% SMT1/SMT2/SMT3 19 1.07% CYP71 18 1.01% CAD 17 0.96% SLS 16 0.9% CPD/CYP90A1 16 0.9% IO 15 0.84% RAS 15 0.84% F3'5'H/CYP75A 14 0.79% TRI/TRII 13 0.73% SGD 13 0.73% HCT 13 0.73% FNS 12 0.68% COMT 12 0.68% CAS 12 0.68% 7DLH 11 0.62% CHS 11 0.62% LAC 11 0.62% CSE 11 0.62% CNMT 9 0.51% G8O/G8H 9 0.51% ANR 9 0.51% CCR 8 0.45% DWF5 8 0.45% ROT3/CYP90C1 8 0.45% NCS 7 0.39% COR 7 0.39% DFR 7 0.39% CYP90D1 6 0.34% AACT 6 0.34% PMT 5 0.28% 8HGO 5 0.28% 16OMT 5 0.28% SMO1/SMO2 5 0.28% ANS/LDOX 4 0.23% CPR 4 0.23% SQS/FDFT1 4 0.23% BR6OX1/CYP85A1 4 0.23% DET2 4 0.23% GGPPS 4 0.23% TPS 4 0.23% MVK 4 0.23% BBE 3 0.17% TDC 3 0.17% ADC 3 0.17% ISY 3 0.17% MPO 3 0.17% CYP80B1 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% TAT 3 0.17% CYP51G1 3 0.17% HYD1 3 0.17% HMGR 3 0.17% DXS 3 0.17% 6OMT_4OMT_SOMT 2 0.11% LAMT 2 0.11% CYP719 2 0.11% CCoAOMT 2 0.11% DWF1 2 0.11% SQE 2 0.11% PMK 2 0.11% MVD 2 0.11% HMGS 2 0.11% IDI 2 0.11% DXR 2 0.11% FPPS 2 0.11% TYDC_DDC 1 0.06% ODC 1 0.06% GES 1 0.06% FLS 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF7 1 0.06% CPI1 1 0.06% HDS/IspG 1 0.06% MCT/IspD 1 0.06% CMK/IspE 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 178 10 POD (102) View species results
Terpenoid pathway 165 19 BAHD (61) View species results
Alkaloid pathway 140 19 7DLGT (33) View species results
Flavonoid pathway 102 8 UFGT (47) View species results
Rosmarinic acid pathway 68 7 C4H (27) View species results
Steroid pathway 40 14 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 650 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 116 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
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Gene Pathway Family Confidence Status Best Target
Tpelscaffold_40069580 Alkaloid ADC medium pass ADC__00004__sp_Q9SI64_SPE1_ARATH
Tpelscaffold_40069600 Alkaloid ADC medium pass ADC__00003__sp_O23141_SPE2_ARATH
Tpelscaffold_80197610 Alkaloid ADC medium pass ADC__00002__sp_A0A1S3YCW2_ADC1A_TOBAC