Tetraphis pellucida (tetraphis_pellucida)
Imported from atlas release summary for Tetraphis pellucida.
693
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
693
Candidate Genes
C4H
6.42%
POD
6.08%
C3'H/CYP98A
5.97%
NMT
5.23%
BAHD
4.95%
CYP76
4.28%
4CL
4.05%
IFS
3.6%
Other Families
59.43%
More Families (95)
UGT
52
2.93%
PAL
51
2.87%
UFGT
50
2.81%
7DLGT
49
2.76%
T3O
46
2.59%
F3H
46
2.59%
BR6OX2/CYP85A2
44
2.48%
STR
42
2.36%
IFR
38
2.14%
GS
32
1.8%
DWF4/CYP90B1
29
1.63%
CODM/T6ODM
28
1.58%
H6H
24
1.35%
F3'H/CYP75B
22
1.24%
T16H
21
1.18%
PYKS
21
1.18%
SMT1/SMT2/SMT3
19
1.07%
CYP71
18
1.01%
CAD
17
0.96%
SLS
16
0.9%
CPD/CYP90A1
16
0.9%
IO
15
0.84%
RAS
15
0.84%
F3'5'H/CYP75A
14
0.79%
TRI/TRII
13
0.73%
SGD
13
0.73%
HCT
13
0.73%
FNS
12
0.68%
COMT
12
0.68%
CAS
12
0.68%
7DLH
11
0.62%
CHS
11
0.62%
LAC
11
0.62%
CSE
11
0.62%
CNMT
9
0.51%
G8O/G8H
9
0.51%
ANR
9
0.51%
CCR
8
0.45%
DWF5
8
0.45%
ROT3/CYP90C1
8
0.45%
NCS
7
0.39%
COR
7
0.39%
DFR
7
0.39%
CYP90D1
6
0.34%
AACT
6
0.34%
PMT
5
0.28%
8HGO
5
0.28%
16OMT
5
0.28%
SMO1/SMO2
5
0.28%
ANS/LDOX
4
0.23%
CPR
4
0.23%
SQS/FDFT1
4
0.23%
BR6OX1/CYP85A1
4
0.23%
DET2
4
0.23%
GGPPS
4
0.23%
TPS
4
0.23%
MVK
4
0.23%
BBE
3
0.17%
TDC
3
0.17%
ADC
3
0.17%
ISY
3
0.17%
MPO
3
0.17%
CYP80B1
3
0.17%
CHI
3
0.17%
F5H/CYP84A
3
0.17%
TAT
3
0.17%
CYP51G1
3
0.17%
HYD1
3
0.17%
HMGR
3
0.17%
DXS
3
0.17%
6OMT_4OMT_SOMT
2
0.11%
LAMT
2
0.11%
CYP719
2
0.11%
CCoAOMT
2
0.11%
DWF1
2
0.11%
SQE
2
0.11%
PMK
2
0.11%
MVD
2
0.11%
HMGS
2
0.11%
IDI
2
0.11%
DXR
2
0.11%
FPPS
2
0.11%
TYDC_DDC
1
0.06%
ODC
1
0.06%
GES
1
0.06%
FLS
1
0.06%
HPPR
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
CPI1
1
0.06%
HDS/IspG
1
0.06%
MCT/IspD
1
0.06%
CMK/IspE
1
0.06%
HDR/IspH
1
0.06%
MDS/IspF
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 178 | 10 | POD (102) | View species results |
| Terpenoid pathway | 165 | 19 | BAHD (61) | View species results |
| Alkaloid pathway | 140 | 19 | 7DLGT (33) | View species results |
| Flavonoid pathway | 102 | 8 | UFGT (47) | View species results |
| Rosmarinic acid pathway | 68 | 7 | C4H (27) | View species results |
| Steroid pathway | 40 | 14 | CAS (10) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 650 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 116 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Tpelscaffold_10003030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_10004920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_10012020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_20027470 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_30057250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_30061060 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_30063400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40073160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40079730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40080110 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpelscaffold_40082360 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40082450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40084500 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40089450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40091330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40092930 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40092940 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_40092950 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50104980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50111080 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50111260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50117620 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50123940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_50129460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_60133990 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpelscaffold_60138440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_60144230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_70163940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_70171610 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_70171850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_70173490 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpelscaffold_80188110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_80193730 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_80196680 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_80197570 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_90208550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_90208560 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_90208730 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpelscaffold_90208790 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Tpelscaffold_90211410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_90216630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Tpelscaffold_90223160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |