PlantSME Plant secondary metabolism enzyme database

Tetraphis pellucida (tetraphis_pellucida)

Imported from atlas release summary for Tetraphis pellucida.

693
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 25.69% Terpenoid pathway 23.81% Alkaloid pathway 20.2% Flavonoid pathway 14.72% Rosmarinic acid pathway 9.81% Steroid pathway 5.77%
Family Distribution
C4H 6.42% POD 6.08% C3'H/CYP98A 5.97% NMT 5.23% BAHD 4.95% CYP76 4.28% 4CL 4.05% IFS 3.6%
Other Families 59.43%
More Families (95)
UGT 52 2.93% PAL 51 2.87% UFGT 50 2.81% 7DLGT 49 2.76% T3O 46 2.59% F3H 46 2.59% BR6OX2/CYP85A2 44 2.48% STR 42 2.36% IFR 38 2.14% GS 32 1.8% DWF4/CYP90B1 29 1.63% CODM/T6ODM 28 1.58% H6H 24 1.35% F3'H/CYP75B 22 1.24% T16H 21 1.18% PYKS 21 1.18% SMT1/SMT2/SMT3 19 1.07% CYP71 18 1.01% CAD 17 0.96% SLS 16 0.9% CPD/CYP90A1 16 0.9% IO 15 0.84% RAS 15 0.84% F3'5'H/CYP75A 14 0.79% TRI/TRII 13 0.73% SGD 13 0.73% HCT 13 0.73% FNS 12 0.68% COMT 12 0.68% CAS 12 0.68% 7DLH 11 0.62% CHS 11 0.62% LAC 11 0.62% CSE 11 0.62% CNMT 9 0.51% G8O/G8H 9 0.51% ANR 9 0.51% CCR 8 0.45% DWF5 8 0.45% ROT3/CYP90C1 8 0.45% NCS 7 0.39% COR 7 0.39% DFR 7 0.39% CYP90D1 6 0.34% AACT 6 0.34% PMT 5 0.28% 8HGO 5 0.28% 16OMT 5 0.28% SMO1/SMO2 5 0.28% ANS/LDOX 4 0.23% CPR 4 0.23% SQS/FDFT1 4 0.23% BR6OX1/CYP85A1 4 0.23% DET2 4 0.23% GGPPS 4 0.23% TPS 4 0.23% MVK 4 0.23% BBE 3 0.17% TDC 3 0.17% ADC 3 0.17% ISY 3 0.17% MPO 3 0.17% CYP80B1 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% TAT 3 0.17% CYP51G1 3 0.17% HYD1 3 0.17% HMGR 3 0.17% DXS 3 0.17% 6OMT_4OMT_SOMT 2 0.11% LAMT 2 0.11% CYP719 2 0.11% CCoAOMT 2 0.11% DWF1 2 0.11% SQE 2 0.11% PMK 2 0.11% MVD 2 0.11% HMGS 2 0.11% IDI 2 0.11% DXR 2 0.11% FPPS 2 0.11% TYDC_DDC 1 0.06% ODC 1 0.06% GES 1 0.06% FLS 1 0.06% HPPR 1 0.06% FK 1 0.06% DWF7 1 0.06% CPI1 1 0.06% HDS/IspG 1 0.06% MCT/IspD 1 0.06% CMK/IspE 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 178 10 POD (102) View species results
Terpenoid pathway 165 19 BAHD (61) View species results
Alkaloid pathway 140 19 7DLGT (33) View species results
Flavonoid pathway 102 8 UFGT (47) View species results
Rosmarinic acid pathway 68 7 C4H (27) View species results
Steroid pathway 40 14 CAS (10) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 650 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 116 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Flavonoid pathway
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Gene Pathway Family Confidence Status
Tpelscaffold_40078610 Flavonoid UFGT medium pass
Tpelscaffold_40082230 Flavonoid UFGT medium pass
Tpelscaffold_40083080 Flavonoid UFGT medium pass
Tpelscaffold_40089520 Flavonoid UFGT medium pass
Tpelscaffold_40089530 Flavonoid UFGT high pass
Tpelscaffold_40096920 Flavonoid UFGT medium pass
Tpelscaffold_40098630 Flavonoid UFGT high pass
Tpelscaffold_50112540 Flavonoid UFGT medium pass
Tpelscaffold_50113520 Flavonoid UFGT medium pass
Tpelscaffold_50113540 Flavonoid UFGT high pass
Tpelscaffold_50120170 Flavonoid UFGT high pass
Tpelscaffold_50124840 Flavonoid UFGT medium pass
Tpelscaffold_60142780 Flavonoid UFGT medium pass
Tpelscaffold_70151500 Flavonoid UFGT medium pass
Tpelscaffold_70157630 Flavonoid UFGT high pass
Tpelscaffold_70158850 Flavonoid UFGT medium pass
Tpelscaffold_70158860 Flavonoid UFGT high pass
Tpelscaffold_70158870 Flavonoid UFGT medium pass
Tpelscaffold_70162960 Flavonoid UFGT medium pass
Tpelscaffold_70165240 Flavonoid UFGT medium pass
Tpelscaffold_70166490 Flavonoid UFGT medium pass
Tpelscaffold_70167200 Flavonoid UFGT medium pass
Tpelscaffold_70167330 Flavonoid UFGT low borderline
Tpelscaffold_70169850 Flavonoid UFGT medium pass
Tpelscaffold_70171480 Flavonoid UFGT medium pass
Tpelscaffold_70172420 Flavonoid UFGT low borderline
Tpelscaffold_80190110 Flavonoid UFGT medium pass
Tpelscaffold_80200010 Flavonoid UFGT medium pass
Tpelscaffold_90217110 Flavonoid UFGT medium pass