Trochodendron aralioides (trochodendron_aralioides)
Imported from atlas release summary for Trochodendron aralioides.
1938
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1938
Candidate Genes
BAHD
5.78%
C3'H/CYP98A
5.55%
UGT
5.17%
C4H
5.08%
7DLGT
4.57%
UFGT
4.57%
IFS
3.91%
4CL
3.82%
Other Families
61.54%
More Families (96)
POD
163
3.71%
CYP76
141
3.21%
F3H
118
2.69%
T3O
117
2.66%
DWF4/CYP90B1
104
2.37%
NMT
90
2.05%
STR
84
1.91%
CODM/T6ODM
81
1.84%
CAD
79
1.8%
F3'H/CYP75B
73
1.66%
CAS
63
1.43%
SMT1/SMT2/SMT3
63
1.43%
BR6OX2/CYP85A2
63
1.43%
TRI/TRII
53
1.21%
GES
49
1.12%
IFR
49
1.12%
CYP71
49
1.12%
TPS
48
1.09%
7DLH
46
1.05%
LAC
46
1.05%
PYKS
44
1.0%
PMT
42
0.96%
H6H
41
0.93%
GS
40
0.91%
RAS
39
0.89%
CYP90D1
39
0.89%
T16H
38
0.86%
HCT
37
0.84%
CSE
35
0.8%
G8O/G8H
31
0.71%
NCS
31
0.71%
CCR
31
0.71%
SGD
30
0.68%
SLS
28
0.64%
COMT
27
0.61%
COR
25
0.57%
LAMT
25
0.57%
IO
23
0.52%
DFR
23
0.52%
CYP51G1
23
0.52%
CPD/CYP90A1
23
0.52%
ANR
22
0.5%
F3'5'H/CYP75A
21
0.48%
CHS
18
0.41%
FNS
18
0.41%
TAT
17
0.39%
BR6OX1/CYP85A1
17
0.39%
16OMT
16
0.36%
BBE
16
0.36%
CPR
16
0.36%
F5H/CYP84A
15
0.34%
CYP719
12
0.27%
8HGO
12
0.27%
PAL
12
0.27%
DXS
12
0.27%
MPO
11
0.25%
ANS/LDOX
10
0.23%
ROT3/CYP90C1
10
0.23%
GGPPS
10
0.23%
CHI
9
0.2%
SQS/FDFT1
9
0.2%
HDS/IspG
9
0.2%
AACT
9
0.2%
ISY
8
0.18%
CCoAOMT
8
0.18%
SMO1/SMO2
8
0.18%
SQE
8
0.18%
FPPS
8
0.18%
TYDC_DDC
7
0.16%
CNMT
7
0.16%
HPPR
7
0.16%
HMGR
7
0.16%
MVK
6
0.14%
MVD
6
0.14%
MCT/IspD
6
0.14%
ODC
5
0.11%
CYP80B1
5
0.11%
ADC
4
0.09%
FLS
4
0.09%
DWF7
4
0.09%
DET2
4
0.09%
DWF5
4
0.09%
HMGS
4
0.09%
MDS/IspF
4
0.09%
DXR
4
0.09%
PMK
4
0.09%
TDC
3
0.07%
DWF1
2
0.05%
HYD1
2
0.05%
FK
2
0.05%
IDI
2
0.05%
HDR/IspH
2
0.05%
CYP80F1
1
0.02%
6OMT_4OMT_SOMT
1
0.02%
CPI1
1
0.02%
CMK/IspE
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 581 | 19 | UGT (216) | View species results |
| Alkaloid pathway | 438 | 25 | 7DLGT (92) | View species results |
| Phenylpropanoid pathway | 364 | 11 | POD (142) | View species results |
| Flavonoid pathway | 295 | 12 | UFGT (188) | View species results |
| Rosmarinic acid pathway | 150 | 7 | C4H (58) | View species results |
| Steroid pathway | 110 | 12 | CAS (44) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1518 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 330 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| evm.model.contig1294.3 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.contig18.3 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.contig732.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| evm.model.contig8.1 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group0.1713 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group0.1721 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group1.2609 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group1.4024 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| evm.model.group1.4025 | Alkaloid | COR | low | borderline | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| evm.model.group1.4026 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group1.4029 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| evm.model.group1.4031 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group12.1309.1 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| evm.model.group12.1315 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| evm.model.group13.1721 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group13.281 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group13.282 | Alkaloid | COR | low | borderline | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| evm.model.group13.293 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group15.858 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group2.3235 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |
| evm.model.group4.1164 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| evm.model.group5.2237 | Alkaloid | COR | medium | pass | COR__00004__sp_Q9SQ69_COR12_PAPSO |
| evm.model.group7.2154 | Alkaloid | COR | medium | pass | COR__00005__sp_Q9SQ70_COR11_PAPSO |
| evm.model.group7.2505 | Alkaloid | COR | medium | pass | COR__00001__sp_B9VRJ2_COR15_PAPSO |
| evm.model.group8.280 | Alkaloid | COR | medium | pass | COR__00002__sp_Q9SQ67_COR14_PAPSO |