PlantSME Plant secondary metabolism enzyme database

Trochodendron aralioides (trochodendron_aralioides)

Imported from atlas release summary for Trochodendron aralioides.

1938
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.98% Alkaloid pathway 22.6% Phenylpropanoid pathway 18.78% Flavonoid pathway 15.22% Rosmarinic acid pathway 7.74% Steroid pathway 5.68%
Family Distribution
BAHD 5.78% C3'H/CYP98A 5.55% UGT 5.17% C4H 5.08% 7DLGT 4.57% UFGT 4.57% IFS 3.91% 4CL 3.82%
Other Families 61.54%
More Families (96)
POD 163 3.71% CYP76 141 3.21% F3H 118 2.69% T3O 117 2.66% DWF4/CYP90B1 104 2.37% NMT 90 2.05% STR 84 1.91% CODM/T6ODM 81 1.84% CAD 79 1.8% F3'H/CYP75B 73 1.66% CAS 63 1.43% SMT1/SMT2/SMT3 63 1.43% BR6OX2/CYP85A2 63 1.43% TRI/TRII 53 1.21% GES 49 1.12% IFR 49 1.12% CYP71 49 1.12% TPS 48 1.09% 7DLH 46 1.05% LAC 46 1.05% PYKS 44 1.0% PMT 42 0.96% H6H 41 0.93% GS 40 0.91% RAS 39 0.89% CYP90D1 39 0.89% T16H 38 0.86% HCT 37 0.84% CSE 35 0.8% G8O/G8H 31 0.71% NCS 31 0.71% CCR 31 0.71% SGD 30 0.68% SLS 28 0.64% COMT 27 0.61% COR 25 0.57% LAMT 25 0.57% IO 23 0.52% DFR 23 0.52% CYP51G1 23 0.52% CPD/CYP90A1 23 0.52% ANR 22 0.5% F3'5'H/CYP75A 21 0.48% CHS 18 0.41% FNS 18 0.41% TAT 17 0.39% BR6OX1/CYP85A1 17 0.39% 16OMT 16 0.36% BBE 16 0.36% CPR 16 0.36% F5H/CYP84A 15 0.34% CYP719 12 0.27% 8HGO 12 0.27% PAL 12 0.27% DXS 12 0.27% MPO 11 0.25% ANS/LDOX 10 0.23% ROT3/CYP90C1 10 0.23% GGPPS 10 0.23% CHI 9 0.2% SQS/FDFT1 9 0.2% HDS/IspG 9 0.2% AACT 9 0.2% ISY 8 0.18% CCoAOMT 8 0.18% SMO1/SMO2 8 0.18% SQE 8 0.18% FPPS 8 0.18% TYDC_DDC 7 0.16% CNMT 7 0.16% HPPR 7 0.16% HMGR 7 0.16% MVK 6 0.14% MVD 6 0.14% MCT/IspD 6 0.14% ODC 5 0.11% CYP80B1 5 0.11% ADC 4 0.09% FLS 4 0.09% DWF7 4 0.09% DET2 4 0.09% DWF5 4 0.09% HMGS 4 0.09% MDS/IspF 4 0.09% DXR 4 0.09% PMK 4 0.09% TDC 3 0.07% DWF1 2 0.05% HYD1 2 0.05% FK 2 0.05% IDI 2 0.05% HDR/IspH 2 0.05% CYP80F1 1 0.02% 6OMT_4OMT_SOMT 1 0.02% CPI1 1 0.02% CMK/IspE 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 581 19 UGT (216) View species results
Alkaloid pathway 438 25 7DLGT (92) View species results
Phenylpropanoid pathway 364 11 POD (142) View species results
Flavonoid pathway 295 12 UFGT (188) View species results
Rosmarinic acid pathway 150 7 C4H (58) View species results
Steroid pathway 110 12 CAS (44) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1518 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 330 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HDS/IspG
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Gene Pathway Family Confidence Status Best Target
evm.model.contig647.2 Terpenoid HDS/IspG low borderline HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group1.2420 Terpenoid HDS/IspG medium pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group1.3667 Terpenoid HDS/IspG high pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group1.3700 Terpenoid HDS/IspG high pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group1.4600 Terpenoid HDS/IspG low borderline HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group11.1218 Terpenoid HDS/IspG medium pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group11.1220 Terpenoid HDS/IspG low borderline HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group2.3603.1 Terpenoid HDS/IspG high pass HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH
evm.model.group4.1600 Terpenoid HDS/IspG low borderline HDS_IspG__00001__sp_F4K0E8_ISPG_ARATH