PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
gossypium_sturtianum_Gstu11G000870 gossypium_sturtianum gossypium_sturtianum_Gstu11G000870
gossypium_sturtianum_Gstu11G041380 gossypium_sturtianum gossypium_sturtianum_Gstu11G041380
GtomA01G0025250.1 gossypium_tomentosum GtomA01G0025250.1
GtomA01G0025250.2 gossypium_tomentosum GtomA01G0025250.2
GtomA04G0010410.1 gossypium_tomentosum GtomA04G0010410.1
GtomA04G0010420.1 gossypium_tomentosum GtomA04G0010420.1
GtomA06G0008940.1 gossypium_tomentosum GtomA06G0008940.1
GtomA09G0017610.1 gossypium_tomentosum GtomA09G0017610.1
GtomA10G0024510.1 gossypium_tomentosum GtomA10G0024510.1
GtomA11G0039050.1 gossypium_tomentosum GtomA11G0039050.1
GtomD01G0026140.1 gossypium_tomentosum GtomD01G0026140.1
GtomD03G0017560.1 gossypium_tomentosum GtomD03G0017560.1
GtomD04G0014030.1 gossypium_tomentosum GtomD04G0014030.1
GtomD04G0014040.1 gossypium_tomentosum GtomD04G0014040.1
GtomD04G0014060.1 gossypium_tomentosum GtomD04G0014060.1
GtomD06G0009400.1 gossypium_tomentosum GtomD06G0009400.1
GtomD09G0017450.1 gossypium_tomentosum GtomD09G0017450.1
GtomD10G0025920.1 gossypium_tomentosum GtomD10G0025920.1
GtomD11G0040880.1 gossypium_tomentosum GtomD11G0040880.1
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.00g269760.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.00g269760.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.01g002120.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.01g002120.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.01g334640.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.01g334640.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094220.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094220.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094240.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094240.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094250.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.04g094250.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.06g167780.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.06g167780.m01.polypeptide
Gossypium-turneri-TURN-v1.0.a2-publish_TURN.09g247670.m01.polypeptide gossypium_turneri Gossypium-turneri-TURN-v1.0.a2-publish_TURN.09g247670.m01.polypeptide
GobtHiC_scaffold_10020350 grimmia_obtusifolia GobtHiC_scaffold_10020350
GobtHiC_scaffold_110045280 grimmia_obtusifolia GobtHiC_scaffold_110045280
GobtHiC_scaffold_30151730 grimmia_obtusifolia GobtHiC_scaffold_30151730