PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
OBART08G10040.1 oryza_barthii OBART08G10040.1
OBART12G13980.1 oryza_barthii OBART12G13980.1
OBART12G14000.1 oryza_barthii OBART12G14000.1
OB02G32060.1 oryza_brachyantha OB02G32060.1
OB02G32080.1 oryza_brachyantha OB02G32080.1
OB02G32090.1 oryza_brachyantha OB02G32090.1
OB02G32100.1 oryza_brachyantha OB02G32100.1
OB04G25930.1 oryza_brachyantha OB04G25930.1
OB04G25940.1 oryza_brachyantha OB04G25940.1
OB04G25950.1 oryza_brachyantha OB04G25950.1
OB05G25140.1 oryza_brachyantha OB05G25140.1
oryza_coarctata_PC_12193 oryza_coarctata oryza_coarctata_PC_12193
oryza_coarctata_PC_21579 oryza_coarctata oryza_coarctata_PC_21579
oryza_coarctata_PC_21580 oryza_coarctata oryza_coarctata_PC_21580
oryza_coarctata_PC_21581 oryza_coarctata oryza_coarctata_PC_21581
oryza_coarctata_PC_23257 oryza_coarctata oryza_coarctata_PC_23257
oryza_coarctata_PC_25416 oryza_coarctata oryza_coarctata_PC_25416
oryza_coarctata_PC_25417 oryza_coarctata oryza_coarctata_PC_25417
oryza_coarctata_PC_38662 oryza_coarctata oryza_coarctata_PC_38662
oryza_coarctata_PC_49400 oryza_coarctata oryza_coarctata_PC_49400
ORGLA02G0214200.1 oryza_glaberrima ORGLA02G0214200.1
ORGLA02G0214300.1 oryza_glaberrima ORGLA02G0214300.1
ORGLA02G0214400.1 oryza_glaberrima ORGLA02G0214400.1
ORGLA02G0214500.1 oryza_glaberrima ORGLA02G0214500.1
ORGLA04G0159500.1 oryza_glaberrima ORGLA04G0159500.1
ORGLA04G0159700.1 oryza_glaberrima ORGLA04G0159700.1
ORGLA05G0149600.1 oryza_glaberrima ORGLA05G0149600.1
ORGLA12G0122600.1 oryza_glaberrima ORGLA12G0122600.1
Oglu02G0024780.1 oryza_glumaepatula Oglu02G0024780.1
Oglu02G0024800.1 oryza_glumaepatula Oglu02G0024800.1