PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
ORGLA04G0028400.1 Alkaloid 16OMT medium borderline
ORGLA05G0199000.1 Alkaloid 16OMT medium borderline
ORGLA05G0199100.1 Alkaloid 16OMT medium borderline
ORGLA06G0085600.1 Alkaloid 16OMT medium borderline
ORGLA06G0100600.1 Alkaloid 16OMT medium borderline
ORGLA06G0224900.1 Alkaloid 16OMT low borderline
ORGLA06G0291200.1 Alkaloid 16OMT low borderline
ORGLA06G0291300.1 Alkaloid 16OMT medium borderline
ORGLA07G0022100.1 Alkaloid 16OMT low borderline
ORGLA07G0113900.1 Alkaloid 16OMT medium borderline
ORGLA07G0114400.1 Alkaloid 16OMT medium borderline
ORGLA07G0114800.1 Alkaloid 16OMT medium borderline
ORGLA08G0028500.1 Alkaloid 16OMT medium borderline
ORGLA08G0036200.1 Alkaloid 16OMT medium borderline
ORGLA08G0080200.1 Alkaloid 16OMT medium borderline
ORGLA09G0047200.1 Alkaloid 16OMT medium borderline
ORGLA10G0007600.1 Alkaloid 16OMT medium borderline
ORGLA10G0007800.1 Alkaloid 16OMT medium borderline
ORGLA11G0068300.1 Alkaloid 16OMT medium borderline
ORGLA11G0092200.1 Alkaloid 16OMT medium borderline
ORGLA11G0092300.1 Alkaloid 16OMT medium borderline
ORGLA11G0092500.1 Alkaloid 16OMT medium borderline
ORGLA11G0136400.1 Alkaloid 16OMT medium borderline
ORGLA11G0208100.1 Alkaloid 16OMT medium borderline
ORGLA11G0208300.1 Alkaloid 16OMT medium borderline
ORGLA11G0208500.1 Alkaloid 16OMT medium borderline
ORGLA12G0067600.1 Alkaloid 16OMT medium borderline
ORGLA12G0100900.1 Alkaloid 16OMT medium borderline
ORGLA12G0101100.1 Alkaloid 16OMT medium borderline
ORGLA12G0101200.1 Alkaloid 16OMT medium borderline
ORGLA12G0191500.1 Alkaloid 16OMT medium borderline
ORGLA11G0207800.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
ORGLA01G0045200.1 Alkaloid 7DLGT high pass
ORGLA01G0045300.1 Alkaloid 7DLGT low borderline
ORGLA01G0045400.1 Alkaloid 7DLGT low borderline
ORGLA01G0048000.1 Alkaloid 7DLGT low borderline
ORGLA01G0172900.1 Alkaloid 7DLGT low borderline
ORGLA01G0173000.1 Alkaloid 7DLGT medium pass
ORGLA01G0185300.1 Alkaloid 7DLGT medium pass
ORGLA01G0185400.1 Alkaloid 7DLGT low borderline
ORGLA01G0185600.1 Alkaloid 7DLGT low borderline
ORGLA01G0193600.1 Alkaloid 7DLGT low borderline
ORGLA01G0193700.1 Alkaloid 7DLGT low borderline
ORGLA01G0220500.1 Alkaloid 7DLGT medium pass
ORGLA01G0220600.1 Alkaloid 7DLGT low borderline
ORGLA01G0227600.1 Alkaloid 7DLGT low borderline
ORGLA01G0246100.1 Alkaloid 7DLGT medium pass
ORGLA01G0246300.1 Alkaloid 7DLGT medium pass
ORGLA01G0246500.1 Alkaloid 7DLGT low borderline
ORGLA01G0246600.1 Alkaloid 7DLGT medium pass