Oryza glaberrima (oryza_glaberrima)
Imported from atlas release summary for Oryza glaberrima.
1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1650
Candidate Genes
C4H
6.36%
C3'H/CYP98A
6.16%
BAHD
5.33%
UGT
4.98%
POD
4.65%
7DLGT
4.55%
UFGT
4.48%
T3O
3.75%
Other Families
59.73%
More Families (97)
IFS
146
3.67%
4CL
117
2.94%
CYP76
116
2.92%
F3'H/CYP75B
95
2.39%
DWF4/CYP90B1
90
2.26%
BR6OX2/CYP85A2
89
2.24%
CYP71
77
1.94%
F3H
75
1.89%
NMT
72
1.81%
TRI/TRII
54
1.36%
SMT1/SMT2/SMT3
53
1.33%
STR
52
1.31%
CAD
50
1.26%
PYKS
48
1.21%
TPS
45
1.13%
GES
40
1.01%
CCR
40
1.01%
CODM/T6ODM
39
0.98%
ANR
39
0.98%
G8O/G8H
38
0.96%
SGD
38
0.96%
CSE
37
0.93%
HCT
36
0.91%
RAS
35
0.88%
CAS
35
0.88%
PMT
34
0.86%
H6H
34
0.86%
LAC
34
0.86%
COMT
34
0.86%
SLS
33
0.83%
IFR
33
0.83%
T16H
31
0.78%
16OMT
31
0.78%
FNS
31
0.78%
CHS
29
0.73%
CYP90D1
28
0.7%
CYP51G1
25
0.63%
PAL
24
0.6%
F5H/CYP84A
24
0.6%
GS
23
0.58%
LAMT
21
0.53%
DFR
21
0.53%
CPD/CYP90A1
20
0.5%
NCS
19
0.48%
IO
15
0.38%
BR6OX1/CYP85A1
15
0.38%
BBE
14
0.35%
F3'5'H/CYP75A
14
0.35%
COR
13
0.33%
8HGO
13
0.33%
CNMT
11
0.28%
7DLH
11
0.28%
CYP80B1
10
0.25%
TAT
10
0.25%
FPPS
10
0.25%
XMT_MXMT_DXMT
9
0.23%
TYDC_DDC
8
0.2%
CPR
8
0.2%
ROT3/CYP90C1
8
0.2%
CYP719
7
0.18%
MPO
6
0.15%
CCoAOMT
6
0.15%
SQS/FDFT1
6
0.15%
AACT
6
0.15%
ADC
5
0.13%
HPPR
5
0.13%
GGPPS
5
0.13%
MVD
5
0.13%
HMGR
5
0.13%
MVK
5
0.13%
TDC
4
0.1%
FLS
4
0.1%
ANS/LDOX
4
0.1%
MCT/IspD
4
0.1%
CYP80F1
3
0.08%
CHI
3
0.08%
DET2
3
0.08%
SMO1/SMO2
3
0.08%
DWF1
3
0.08%
HMGS
3
0.08%
ISY
2
0.05%
HYD1
2
0.05%
FK
2
0.05%
SQE
2
0.05%
DXR
2
0.05%
MDS/IspF
2
0.05%
HDR/IspH
2
0.05%
IDI
2
0.05%
DXS
2
0.05%
ODC
1
0.03%
6OMT_4OMT_SOMT
1
0.03%
DWF7
1
0.03%
DWF5
1
0.03%
CPI1
1
0.03%
CMK/IspE
1
0.03%
HDS/IspG
1
0.03%
PMK
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 457 | 19 | UGT (179) | View species results |
| Alkaloid pathway | 371 | 23 | 7DLGT (76) | View species results |
| Phenylpropanoid pathway | 341 | 13 | POD (176) | View species results |
| Flavonoid pathway | 266 | 13 | UFGT (169) | View species results |
| Rosmarinic acid pathway | 129 | 7 | C4H (67) | View species results |
| Steroid pathway | 86 | 14 | SMT1/SMT2/SMT3 (36) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1542 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 283 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ORGLA02G0238500.1 | Alkaloid | IO | low | borderline |
| ORGLA03G0220200.1 | Alkaloid | IO | medium | pass |
| ORGLA03G0319900.1 | Alkaloid | IO | medium | borderline |
| ORGLA04G0086300.1 | Alkaloid | IO | medium | borderline |
| ORGLA04G0273200.1 | Alkaloid | IO | medium | borderline |
| ORGLA05G0000900.1 | Alkaloid | IO | low | borderline |
| ORGLA05G0099000.1 | Alkaloid | IO | medium | borderline |
| ORGLA06G0096600.1 | Alkaloid | IO | medium | borderline |
| ORGLA08G0014600.1 | Alkaloid | IO | medium | borderline |
| ORGLA08G0218500.1 | Alkaloid | IO | medium | borderline |
| ORGLA10G0014900.1 | Alkaloid | IO | low | borderline |
| ORGLA10G0027600.1 | Alkaloid | IO | medium | borderline |
| ORGLA10G0057800.1 | Alkaloid | IO | medium | borderline |
| ORGLA10G0068200.1 | Alkaloid | IO | medium | borderline |
| ORGLA12G0201000.1 | Alkaloid | IO | medium | borderline |