PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
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Gene Pathway Family Confidence Status
ORGLA01G0130500.1 Phenylpropanoid LAC medium pass
ORGLA01G0288900.1 Phenylpropanoid LAC low borderline
ORGLA01G0296000.1 Phenylpropanoid LAC medium pass
ORGLA01G0307000.1 Phenylpropanoid LAC medium pass
ORGLA01G0307100.1 Phenylpropanoid LAC medium pass
ORGLA01G0308200.1 Phenylpropanoid LAC medium pass
ORGLA01G0312300.1 Phenylpropanoid LAC medium pass
ORGLA01G0312400.1 Phenylpropanoid LAC medium pass
ORGLA01G0312500.1 Phenylpropanoid LAC medium pass
ORGLA01G0412300.1 Phenylpropanoid LAC low borderline
ORGLA02G0281500.1 Phenylpropanoid LAC medium pass
ORGLA03G0117900.1 Phenylpropanoid LAC medium pass
ORGLA03G0135100.1 Phenylpropanoid LAC medium pass
ORGLA04G0187000.1 Phenylpropanoid LAC low borderline
ORGLA05G0075000.1 Phenylpropanoid LAC low borderline
ORGLA05G0165800.1 Phenylpropanoid LAC medium pass
ORGLA05G0166200.1 Phenylpropanoid LAC medium pass
ORGLA06G0002400.1 Phenylpropanoid LAC low borderline
ORGLA06G0156400.1 Phenylpropanoid LAC medium pass
ORGLA06G0156600.1 Phenylpropanoid LAC low borderline
ORGLA07G0000800.1 Phenylpropanoid LAC medium pass
ORGLA07G0012200.1 Phenylpropanoid LAC low borderline
ORGLA08G0026300.1 Phenylpropanoid LAC low borderline
ORGLA09G0056500.1 Phenylpropanoid LAC medium pass
ORGLA09G0122000.1 Phenylpropanoid LAC medium pass
ORGLA09G0172900.1 Phenylpropanoid LAC low borderline
ORGLA10G0055500.1 Phenylpropanoid LAC medium pass
ORGLA10G0097600.1 Phenylpropanoid LAC low borderline
ORGLA10G0098200.1 Phenylpropanoid LAC medium pass
ORGLA11G0007100.1 Phenylpropanoid LAC medium pass
ORGLA11G0172600.1 Phenylpropanoid LAC medium pass
ORGLA12G0072300.1 Phenylpropanoid LAC medium pass
ORGLA12G0072600.1 Phenylpropanoid LAC medium pass
ORGLA12G0073200.1 Phenylpropanoid LAC medium pass