PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAMT
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Gene Pathway Family Confidence Status
ORGLA02G0259200.1 Alkaloid LAMT medium borderline
ORGLA04G0249200.1 Alkaloid LAMT medium borderline
ORGLA04G0250200.1 Alkaloid LAMT medium borderline
ORGLA04G0250500.1 Alkaloid LAMT low borderline
ORGLA06G0086000.1 Alkaloid LAMT medium borderline
ORGLA06G0086100.1 Alkaloid LAMT medium borderline
ORGLA06G0086600.1 Alkaloid LAMT medium borderline
ORGLA06G0086700.1 Alkaloid LAMT medium borderline
ORGLA06G0100000.1 Alkaloid LAMT medium borderline
ORGLA06G0114300.1 Alkaloid LAMT medium borderline
ORGLA06G0114400.1 Alkaloid LAMT medium borderline
ORGLA06G0114600.1 Alkaloid LAMT medium borderline
ORGLA06G0114700.1 Alkaloid LAMT medium borderline
ORGLA06G0119500.1 Alkaloid LAMT medium borderline
ORGLA06G0294500.1 Alkaloid LAMT medium borderline
ORGLA06G0301200.1 Alkaloid LAMT medium borderline
ORGLA06G0302000.1 Alkaloid LAMT medium borderline
ORGLA11G0076800.1 Alkaloid LAMT medium borderline
ORGLA11G0076900.1 Alkaloid LAMT medium borderline
ORGLA11G0077100.1 Alkaloid LAMT medium borderline
ORGLA11G0077200.1 Alkaloid LAMT medium borderline