PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
ORGLA01G0291500.1 Flavonoid C4H medium pass
ORGLA02G0140700.1 Flavonoid C4H low borderline
ORGLA02G0140800.1 Flavonoid C4H low borderline
ORGLA04G0018200.1 Flavonoid C4H low borderline
ORGLA04G0273100.1 Flavonoid C4H low borderline
ORGLA05G0099000.1 Flavonoid C4H medium borderline
ORGLA06G0147900.1 Flavonoid C4H low borderline
ORGLA06G0157300.1 Flavonoid C4H medium borderline
ORGLA07G0189200.1 Flavonoid C4H medium borderline
ORGLA08G0104600.1 Flavonoid C4H low borderline
ORGLA08G0175200.1 Flavonoid C4H low borderline
ORGLA01G0050300.1 Rosmarinic Acid C4H low borderline
ORGLA01G0058700.1 Rosmarinic Acid C4H low borderline
ORGLA01G0072000.1 Rosmarinic Acid C4H medium pass
ORGLA01G0072100.1 Rosmarinic Acid C4H low borderline
ORGLA01G0072200.1 Rosmarinic Acid C4H medium pass
ORGLA01G0072300.1 Rosmarinic Acid C4H medium pass
ORGLA01G0121200.1 Rosmarinic Acid C4H low borderline
ORGLA01G0131600.1 Rosmarinic Acid C4H medium pass
ORGLA01G0134000.1 Rosmarinic Acid C4H low borderline
ORGLA01G0161800.1 Rosmarinic Acid C4H low borderline
ORGLA01G0173600.1 Rosmarinic Acid C4H low borderline
ORGLA01G0173700.1 Rosmarinic Acid C4H low borderline
ORGLA01G0173800.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189200.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189300.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189400.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189500.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189600.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189800.1 Rosmarinic Acid C4H low borderline
ORGLA01G0189900.1 Rosmarinic Acid C4H low borderline
ORGLA01G0190000.1 Rosmarinic Acid C4H low borderline
ORGLA01G0229400.1 Rosmarinic Acid C4H medium pass
ORGLA01G0281700.1 Rosmarinic Acid C4H low borderline
ORGLA01G0281900.1 Rosmarinic Acid C4H low borderline
ORGLA01G0291500.1 Rosmarinic Acid C4H medium pass
ORGLA01G0381800.1 Rosmarinic Acid C4H low borderline
ORGLA01G0381900.1 Rosmarinic Acid C4H low borderline
ORGLA01G0382000.1 Rosmarinic Acid C4H low borderline
ORGLA02G0006500.1 Rosmarinic Acid C4H low borderline
ORGLA02G0059300.1 Rosmarinic Acid C4H low borderline
ORGLA02G0059400.1 Rosmarinic Acid C4H medium pass
ORGLA02G0059500.1 Rosmarinic Acid C4H medium pass
ORGLA02G0059600.1 Rosmarinic Acid C4H medium pass
ORGLA02G0059700.1 Rosmarinic Acid C4H low borderline
ORGLA02G0059800.1 Rosmarinic Acid C4H low borderline
ORGLA02G0059900.1 Rosmarinic Acid C4H low borderline
ORGLA02G0060000.1 Rosmarinic Acid C4H low borderline
ORGLA02G0060100.1 Rosmarinic Acid C4H low borderline
ORGLA02G0060200.1 Rosmarinic Acid C4H medium pass