PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: DFR
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Gene Pathway Family Confidence Status
ORGLA01G0099700.1 Flavonoid DFR low borderline
ORGLA01G0193000.1 Flavonoid DFR medium borderline
ORGLA02G0056800.1 Flavonoid DFR medium borderline
ORGLA02G0319100.1 Flavonoid DFR medium pass
ORGLA02G0320900.1 Flavonoid DFR medium pass
ORGLA02G0321000.1 Flavonoid DFR medium pass
ORGLA02G0321100.1 Flavonoid DFR medium borderline
ORGLA02G0321200.1 Flavonoid DFR medium pass
ORGLA03G0356700.1 Flavonoid DFR medium borderline
ORGLA05G0233500.1 Flavonoid DFR medium pass
ORGLA08G0042400.1 Flavonoid DFR low borderline
ORGLA08G0180700.1 Flavonoid DFR medium borderline
ORGLA09G0010800.1 Flavonoid DFR medium borderline
ORGLA09G0023600.1 Flavonoid DFR medium pass
ORGLA09G0023900.1 Flavonoid DFR medium borderline
ORGLA09G0024000.1 Flavonoid DFR low borderline
ORGLA09G0115400.1 Flavonoid DFR medium pass
ORGLA09G0180700.1 Flavonoid DFR medium borderline
ORGLA09G0180900.1 Flavonoid DFR medium borderline
ORGLA11G0155000.1 Flavonoid DFR low borderline
ORGLA12G0178800.1 Flavonoid DFR low borderline