PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAD
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Gene Pathway Family Confidence Status
ORGLA01G0117800.1 Phenylpropanoid CAD low borderline
ORGLA01G0149600.1 Phenylpropanoid CAD medium borderline
ORGLA02G0061600.1 Phenylpropanoid CAD medium pass
ORGLA02G0136100.1 Phenylpropanoid CAD low borderline
ORGLA02G0183500.1 Phenylpropanoid CAD low borderline
ORGLA03G0060100.1 Phenylpropanoid CAD low borderline
ORGLA03G0086300.1 Phenylpropanoid CAD medium pass
ORGLA03G0164700.1 Phenylpropanoid CAD low borderline
ORGLA03G0164800.1 Phenylpropanoid CAD low borderline
ORGLA03G0172100.1 Phenylpropanoid CAD medium pass
ORGLA03G0206300.1 Phenylpropanoid CAD low borderline
ORGLA03G0356700.1 Phenylpropanoid CAD medium borderline
ORGLA04G0004300.1 Phenylpropanoid CAD medium pass
ORGLA04G0021100.1 Phenylpropanoid CAD low borderline
ORGLA04G0037600.1 Phenylpropanoid CAD medium pass
ORGLA04G0060400.1 Phenylpropanoid CAD low borderline
ORGLA04G0060500.1 Phenylpropanoid CAD low borderline
ORGLA04G0060900.1 Phenylpropanoid CAD low borderline
ORGLA04G0061100.1 Phenylpropanoid CAD low borderline
ORGLA04G0061600.1 Phenylpropanoid CAD low borderline
ORGLA04G0061700.1 Phenylpropanoid CAD low borderline
ORGLA04G0061800.1 Phenylpropanoid CAD low borderline
ORGLA04G0062000.1 Phenylpropanoid CAD low borderline
ORGLA04G0062100.1 Phenylpropanoid CAD low borderline
ORGLA04G0062300.1 Phenylpropanoid CAD low borderline
ORGLA04G0213000.1 Phenylpropanoid CAD medium borderline
ORGLA04G0213100.1 Phenylpropanoid CAD medium borderline
ORGLA04G0213300.1 Phenylpropanoid CAD medium borderline
ORGLA04G0220600.1 Phenylpropanoid CAD low borderline
ORGLA04G0221000.1 Phenylpropanoid CAD medium pass
ORGLA04G0233400.1 Phenylpropanoid CAD medium borderline
ORGLA04G0233500.1 Phenylpropanoid CAD medium borderline
ORGLA04G0233600.1 Phenylpropanoid CAD medium borderline
ORGLA05G0010900.1 Phenylpropanoid CAD low borderline
ORGLA08G0000400.1 Phenylpropanoid CAD low borderline
ORGLA08G0019200.1 Phenylpropanoid CAD low borderline
ORGLA08G0035300.1 Phenylpropanoid CAD medium pass
ORGLA08G0072700.1 Phenylpropanoid CAD medium pass
ORGLA08G0180700.1 Phenylpropanoid CAD medium borderline
ORGLA09G0070800.1 Phenylpropanoid CAD medium pass
ORGLA09G0070900.1 Phenylpropanoid CAD medium pass
ORGLA09G0071000.1 Phenylpropanoid CAD medium pass
ORGLA09G0071100.1 Phenylpropanoid CAD medium pass
ORGLA10G0039300.1 Phenylpropanoid CAD medium pass
ORGLA10G0094500.1 Phenylpropanoid CAD medium pass
ORGLA10G0169100.1 Phenylpropanoid CAD low borderline
ORGLA11G0058300.1 Phenylpropanoid CAD low borderline
ORGLA11G0058400.1 Phenylpropanoid CAD low borderline
ORGLA11G0059500.1 Phenylpropanoid CAD low borderline
ORGLA12G0113400.1 Phenylpropanoid CAD low borderline