PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
ORGLA01G0003100.1 Phenylpropanoid HCT medium pass
ORGLA01G0047500.1 Phenylpropanoid HCT low borderline
ORGLA01G0051800.1 Phenylpropanoid HCT low borderline
ORGLA01G0102900.1 Phenylpropanoid HCT low borderline
ORGLA01G0121100.1 Phenylpropanoid HCT medium pass
ORGLA01G0131800.1 Phenylpropanoid HCT low borderline
ORGLA01G0182300.1 Phenylpropanoid HCT low borderline
ORGLA02G0000100.1 Phenylpropanoid HCT low borderline
ORGLA02G0206100.1 Phenylpropanoid HCT medium pass
ORGLA04G0018500.1 Phenylpropanoid HCT low borderline
ORGLA04G0147900.1 Phenylpropanoid HCT medium pass
ORGLA04G0212300.1 Phenylpropanoid HCT low borderline
ORGLA04G0212400.1 Phenylpropanoid HCT low borderline
ORGLA05G0026300.1 Phenylpropanoid HCT low borderline
ORGLA05G0047800.1 Phenylpropanoid HCT low borderline
ORGLA06G0050400.1 Phenylpropanoid HCT medium pass
ORGLA06G0050600.1 Phenylpropanoid HCT medium pass
ORGLA06G0050800.1 Phenylpropanoid HCT medium pass
ORGLA06G0227600.1 Phenylpropanoid HCT medium pass
ORGLA07G0023300.1 Phenylpropanoid HCT low borderline
ORGLA07G0145000.1 Phenylpropanoid HCT low borderline
ORGLA08G0052600.1 Phenylpropanoid HCT medium pass
ORGLA08G0221600.1 Phenylpropanoid HCT medium pass
ORGLA08G0221700.1 Phenylpropanoid HCT low borderline
ORGLA09G0078800.1 Phenylpropanoid HCT medium pass
ORGLA10G0002700.1 Phenylpropanoid HCT low borderline
ORGLA10G0004200.1 Phenylpropanoid HCT low borderline
ORGLA10G0008500.1 Phenylpropanoid HCT low borderline
ORGLA10G0008600.1 Phenylpropanoid HCT low borderline
ORGLA10G0039900.1 Phenylpropanoid HCT low borderline
ORGLA10G0069200.1 Phenylpropanoid HCT low borderline
ORGLA11G0048500.1 Phenylpropanoid HCT medium pass
ORGLA11G0124800.1 Phenylpropanoid HCT medium pass
ORGLA11G0173100.1 Phenylpropanoid HCT low borderline
ORGLA11G0173500.1 Phenylpropanoid HCT low borderline
ORGLA11G0213200.1 Phenylpropanoid HCT medium pass