PlantSME Plant secondary metabolism enzyme database

Oryza glaberrima (oryza_glaberrima)

Imported from atlas release summary for Oryza glaberrima.

1650
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 457 19 UGT (179) View species results
Alkaloid pathway 371 23 7DLGT (76) View species results
Phenylpropanoid pathway 341 13 POD (176) View species results
Flavonoid pathway 266 13 UFGT (169) View species results
Rosmarinic acid pathway 129 7 C4H (67) View species results
Steroid pathway 86 14 SMT1/SMT2/SMT3 (36) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1542 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 283 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
ORGLA01G0246700.1 Alkaloid 7DLGT medium pass
ORGLA01G0246800.1 Alkaloid 7DLGT medium pass
ORGLA01G0246900.1 Alkaloid 7DLGT medium pass
ORGLA01G0247100.1 Alkaloid 7DLGT medium pass
ORGLA01G0282800.1 Alkaloid 7DLGT low borderline
ORGLA01G0282900.1 Alkaloid 7DLGT low borderline
ORGLA01G0321800.1 Alkaloid 7DLGT low borderline
ORGLA01G0325200.1 Alkaloid 7DLGT low borderline
ORGLA02G0061800.1 Alkaloid 7DLGT low borderline
ORGLA02G0074100.1 Alkaloid 7DLGT medium pass
ORGLA02G0075900.1 Alkaloid 7DLGT low borderline
ORGLA02G0076000.1 Alkaloid 7DLGT low borderline
ORGLA02G0076100.1 Alkaloid 7DLGT low borderline
ORGLA02G0076200.1 Alkaloid 7DLGT medium pass
ORGLA02G0076300.1 Alkaloid 7DLGT low borderline
ORGLA02G0076400.1 Alkaloid 7DLGT low borderline
ORGLA02G0092100.1 Alkaloid 7DLGT medium pass
ORGLA02G0092200.1 Alkaloid 7DLGT low borderline
ORGLA02G0092300.1 Alkaloid 7DLGT medium pass
ORGLA02G0092700.1 Alkaloid 7DLGT low borderline
ORGLA02G0140400.1 Alkaloid 7DLGT medium pass
ORGLA02G0149600.1 Alkaloid 7DLGT medium pass
ORGLA02G0285700.1 Alkaloid 7DLGT medium pass
ORGLA02G0285800.1 Alkaloid 7DLGT medium pass
ORGLA02G0285900.1 Alkaloid 7DLGT medium pass
ORGLA02G0315700.1 Alkaloid 7DLGT medium pass
ORGLA03G0078600.1 Alkaloid 7DLGT low borderline
ORGLA03G0170700.1 Alkaloid 7DLGT low borderline
ORGLA03G0265400.1 Alkaloid 7DLGT low borderline
ORGLA03G0278600.1 Alkaloid 7DLGT medium pass
ORGLA03G0284400.1 Alkaloid 7DLGT low borderline
ORGLA03G0284500.1 Alkaloid 7DLGT low borderline
ORGLA03G0308700.1 Alkaloid 7DLGT low borderline
ORGLA03G0317500.1 Alkaloid 7DLGT low borderline
ORGLA03G0317700.1 Alkaloid 7DLGT medium pass
ORGLA03G0317800.1 Alkaloid 7DLGT low borderline
ORGLA03G0318000.1 Alkaloid 7DLGT medium pass
ORGLA03G0318100.1 Alkaloid 7DLGT medium pass
ORGLA03G0346500.1 Alkaloid 7DLGT low borderline
ORGLA03G0349300.1 Alkaloid 7DLGT low borderline
ORGLA03G0361800.1 Alkaloid 7DLGT medium pass
ORGLA03G0372700.1 Alkaloid 7DLGT low borderline
ORGLA04G0028900.1 Alkaloid 7DLGT low borderline
ORGLA04G0030300.1 Alkaloid 7DLGT medium pass
ORGLA04G0030400.1 Alkaloid 7DLGT low borderline
ORGLA04G0030500.1 Alkaloid 7DLGT low borderline
ORGLA04G0030600.1 Alkaloid 7DLGT low borderline
ORGLA04G0042600.1 Alkaloid 7DLGT low borderline
ORGLA04G0042900.1 Alkaloid 7DLGT low borderline
ORGLA04G0043000.1 Alkaloid 7DLGT low borderline