PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Gene Pathway Family Confidence Status
OBART01G31140.1 Alkaloid 16OMT medium borderline
OBART04G03800.1 Alkaloid 16OMT medium borderline
OBART05G22680.1 Alkaloid 16OMT medium borderline
OBART05G22690.1 Alkaloid 16OMT medium borderline
OBART06G09030.1 Alkaloid 16OMT medium borderline
OBART06G10680.1 Alkaloid 16OMT medium borderline
OBART06G10780.1 Alkaloid 16OMT medium borderline
OBART07G13410.1 Alkaloid 16OMT medium borderline
OBART07G13490.1 Alkaloid 16OMT medium borderline
OBART07G13500.1 Alkaloid 16OMT medium borderline
OBART07G23990.1 Alkaloid 16OMT medium pass
OBART08G03420.1 Alkaloid 16OMT medium borderline
OBART08G04170.1 Alkaloid 16OMT medium borderline
OBART08G09390.1 Alkaloid 16OMT medium borderline
OBART08G17000.1 Alkaloid 16OMT medium borderline
OBART09G06540.1 Alkaloid 16OMT medium borderline
OBART09G19620.1 Alkaloid 16OMT low borderline
OBART09G19620.2 Alkaloid 16OMT low borderline
OBART10G00870.1 Alkaloid 16OMT medium borderline
OBART10G00900.1 Alkaloid 16OMT medium borderline
OBART10G03140.1 Alkaloid 16OMT medium borderline
OBART11G07680.1 Alkaloid 16OMT medium borderline
OBART11G10550.1 Alkaloid 16OMT medium borderline
OBART11G10590.1 Alkaloid 16OMT medium borderline
OBART11G10620.1 Alkaloid 16OMT medium borderline
OBART11G10650.1 Alkaloid 16OMT medium borderline
OBART11G10690.1 Alkaloid 16OMT medium borderline
OBART11G10700.1 Alkaloid 16OMT medium borderline
OBART11G10720.1 Alkaloid 16OMT medium borderline
OBART11G16110.1 Alkaloid 16OMT medium borderline
OBART12G07130.1 Alkaloid 16OMT medium borderline
OBART12G10810.1 Alkaloid 16OMT medium borderline
OBART12G10830.1 Alkaloid 16OMT medium borderline
OBART12G10840.1 Alkaloid 16OMT medium borderline
OBART12G10960.1 Alkaloid 16OMT medium borderline
OBART12G16020.1 Alkaloid 16OMT low borderline
OBART07G24300.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
OBART01G04900.1 Alkaloid 7DLGT low borderline
OBART01G04920.1 Alkaloid 7DLGT low borderline
OBART01G04920.2 Alkaloid 7DLGT high pass
OBART01G04920.3 Alkaloid 7DLGT low borderline
OBART01G04920.4 Alkaloid 7DLGT low borderline
OBART01G21600.1 Alkaloid 7DLGT low borderline
OBART01G23030.1 Alkaloid 7DLGT medium pass
OBART01G24040.1 Alkaloid 7DLGT low borderline
OBART01G24050.1 Alkaloid 7DLGT low borderline
OBART01G26900.1 Alkaloid 7DLGT low borderline
OBART01G26910.1 Alkaloid 7DLGT medium pass
OBART01G27600.1 Alkaloid 7DLGT low borderline
OBART01G30000.1 Alkaloid 7DLGT medium pass