PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
Reset
Gene Pathway Family Confidence Status
OBART01G14020.1 Alkaloid H6H low borderline
OBART01G30540.1 Alkaloid H6H low borderline
OBART01G31380.1 Alkaloid H6H medium borderline
OBART01G36020.1 Alkaloid H6H low borderline
OBART01G36130.1 Alkaloid H6H medium borderline
OBART01G39570.1 Alkaloid H6H high pass
OBART01G43160.1 Alkaloid H6H medium borderline
OBART02G22420.1 Alkaloid H6H low borderline
OBART02G34120.1 Alkaloid H6H medium borderline
OBART03G22670.1 Alkaloid H6H medium borderline
OBART03G30250.1 Alkaloid H6H low borderline
OBART03G41540.1 Alkaloid H6H medium borderline
OBART04G03080.1 Alkaloid H6H medium borderline
OBART04G11610.1 Alkaloid H6H low borderline
OBART04G28440.1 Alkaloid H6H high pass
OBART05G01970.1 Alkaloid H6H medium borderline
OBART05G16950.1 Alkaloid H6H medium borderline
OBART05G22620.1 Alkaloid H6H low borderline
OBART05G26740.1 Alkaloid H6H low borderline
OBART07G00270.1 Alkaloid H6H medium pass
OBART07G04400.1 Alkaloid H6H medium borderline
OBART07G04410.1 Alkaloid H6H medium pass
OBART08G13550.1 Alkaloid H6H low borderline
OBART08G14770.1 Alkaloid H6H low borderline
OBART08G14770.2 Alkaloid H6H low borderline
OBART08G14770.3 Alkaloid H6H low borderline
OBART09G01930.1 Alkaloid H6H low borderline
OBART09G02060.1 Alkaloid H6H low borderline
OBART09G02060.2 Alkaloid H6H low borderline
OBART09G12350.1 Alkaloid H6H medium borderline
OBART10G05300.1 Alkaloid H6H low borderline
OBART10G16180.1 Alkaloid H6H low borderline
OBART10G16180.2 Alkaloid H6H low borderline
OBART10G16180.3 Alkaloid H6H low borderline
OBART10G16180.4 Alkaloid H6H low borderline
OBART10G16180.5 Alkaloid H6H low borderline
OBART10G16970.1 Alkaloid H6H medium borderline
OBART10G18290.1 Alkaloid H6H medium borderline
OBART10G18410.1 Alkaloid H6H medium borderline
OBART11G05390.1 Alkaloid H6H medium pass
OBART11G09110.1 Alkaloid H6H low borderline
OBART11G11910.1 Alkaloid H6H medium borderline