PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: LAC
Reset
Gene Pathway Family Confidence Status
OBART01G15850.1 Phenylpropanoid LAC medium pass
OBART01G23820.1 Phenylpropanoid LAC medium pass
OBART01G35060.1 Phenylpropanoid LAC low borderline
OBART01G35810.1 Phenylpropanoid LAC medium pass
OBART01G36820.1 Phenylpropanoid LAC medium pass
OBART01G36830.1 Phenylpropanoid LAC medium pass
OBART01G36970.1 Phenylpropanoid LAC medium pass
OBART01G37400.1 Phenylpropanoid LAC low borderline
OBART01G37400.2 Phenylpropanoid LAC medium pass
OBART02G32600.1 Phenylpropanoid LAC medium pass
OBART03G12210.1 Phenylpropanoid LAC medium pass
OBART03G13980.1 Phenylpropanoid LAC medium pass
OBART04G21620.1 Phenylpropanoid LAC low borderline
OBART05G19160.1 Phenylpropanoid LAC medium pass
OBART05G19180.1 Phenylpropanoid LAC medium pass
OBART06G00250.1 Phenylpropanoid LAC low borderline
OBART06G18860.1 Phenylpropanoid LAC medium pass
OBART06G18870.1 Phenylpropanoid LAC low borderline
OBART06G18870.2 Phenylpropanoid LAC low borderline
OBART07G00080.1 Phenylpropanoid LAC medium pass
OBART07G01340.1 Phenylpropanoid LAC low borderline
OBART08G03240.1 Phenylpropanoid LAC low borderline
OBART09G07710.1 Phenylpropanoid LAC medium pass
OBART09G15770.1 Phenylpropanoid LAC medium borderline
OBART10G06740.1 Phenylpropanoid LAC medium pass
OBART10G11090.1 Phenylpropanoid LAC low borderline
OBART11G00530.1 Phenylpropanoid LAC low borderline
OBART11G08980.1 Phenylpropanoid LAC medium pass
OBART11G20910.1 Phenylpropanoid LAC medium pass
OBART11G20930.1 Phenylpropanoid LAC medium pass
OBART11G23830.1 Phenylpropanoid LAC medium pass
OBART12G00340.1 Phenylpropanoid LAC medium pass
OBART12G07500.1 Phenylpropanoid LAC medium pass
OBART12G07530.1 Phenylpropanoid LAC medium pass
OBART12G07530.2 Phenylpropanoid LAC medium pass
OBART12G07600.1 Phenylpropanoid LAC medium pass