PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 4CL
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Gene Pathway Family Confidence Status
OBART01G14350.1 Flavonoid 4CL medium pass
OBART01G23930.1 Flavonoid 4CL low borderline
OBART01G25130.1 Flavonoid 4CL low borderline
OBART01G26650.1 Flavonoid 4CL low borderline
OBART01G31790.1 Flavonoid 4CL low borderline
OBART01G31790.2 Flavonoid 4CL low borderline
OBART01G40730.1 Flavonoid 4CL medium pass
OBART01G40730.2 Flavonoid 4CL medium pass
OBART02G01430.1 Flavonoid 4CL medium pass
OBART02G05870.1 Flavonoid 4CL medium pass
OBART02G18710.1 Flavonoid 4CL low borderline
OBART02G24240.1 Flavonoid 4CL medium pass
OBART02G28930.1 Flavonoid 4CL medium pass
OBART02G37730.1 Flavonoid 4CL low borderline
OBART03G02390.1 Flavonoid 4CL medium pass
OBART03G02550.1 Flavonoid 4CL medium pass
OBART03G02670.1 Flavonoid 4CL low borderline
OBART03G04080.1 Flavonoid 4CL medium pass
OBART03G14460.1 Flavonoid 4CL medium pass
OBART03G14470.1 Flavonoid 4CL medium pass
OBART03G40810.1 Flavonoid 4CL low borderline
OBART03G40810.2 Flavonoid 4CL low borderline
OBART03G40810.3 Flavonoid 4CL low borderline
OBART03G40810.4 Flavonoid 4CL low borderline
OBART03G40810.5 Flavonoid 4CL low borderline
OBART04G07180.1 Flavonoid 4CL medium pass
OBART04G11430.1 Flavonoid 4CL low borderline
OBART04G26430.1 Flavonoid 4CL low borderline
OBART04G29410.1 Flavonoid 4CL medium pass
OBART04G30120.1 Flavonoid 4CL medium pass
OBART05G02260.1 Flavonoid 4CL low borderline
OBART05G02260.2 Flavonoid 4CL low borderline
OBART05G11400.1 Flavonoid 4CL low borderline
OBART06G03810.1 Flavonoid 4CL low borderline
OBART06G23310.1 Flavonoid 4CL medium pass
OBART07G23680.1 Flavonoid 4CL medium pass
OBART08G01930.1 Flavonoid 4CL low borderline
OBART08G02630.1 Flavonoid 4CL medium pass
OBART08G07460.1 Flavonoid 4CL medium pass
OBART08G16570.1 Flavonoid 4CL medium pass
OBART09G19190.1 Flavonoid 4CL medium pass
OBART10G19730.1 Flavonoid 4CL medium pass
OBART10G19730.2 Flavonoid 4CL medium pass
OBART11G02990.1 Flavonoid 4CL low borderline
OBART11G02990.2 Flavonoid 4CL low borderline
OBART11G02990.3 Flavonoid 4CL low borderline
OBART11G04390.1 Flavonoid 4CL low borderline
OBART11G17090.1 Flavonoid 4CL low borderline
OBART12G02670.1 Flavonoid 4CL low borderline
OBART12G02670.2 Flavonoid 4CL low borderline