PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HCT
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Gene Pathway Family Confidence Status
OBART01G00390.1 Phenylpropanoid HCT medium pass
OBART01G05110.1 Phenylpropanoid HCT low borderline
OBART01G05570.1 Phenylpropanoid HCT low borderline
OBART01G14720.1 Phenylpropanoid HCT medium pass
OBART01G16160.1 Phenylpropanoid HCT medium pass
OBART01G22700.1 Phenylpropanoid HCT low borderline
OBART01G42340.1 Phenylpropanoid HCT low borderline
OBART02G00070.1 Phenylpropanoid HCT low borderline
OBART02G23830.1 Phenylpropanoid HCT medium pass
OBART04G17650.1 Phenylpropanoid HCT medium pass
OBART04G24760.1 Phenylpropanoid HCT low borderline
OBART05G01220.1 Phenylpropanoid HCT medium pass
OBART05G02780.1 Phenylpropanoid HCT low borderline
OBART06G05510.1 Phenylpropanoid HCT medium pass
OBART06G05530.1 Phenylpropanoid HCT low borderline
OBART06G05550.1 Phenylpropanoid HCT low borderline
OBART07G02630.1 Phenylpropanoid HCT low borderline
OBART07G18100.1 Phenylpropanoid HCT low borderline
OBART08G05920.1 Phenylpropanoid HCT medium pass
OBART08G22300.1 Phenylpropanoid HCT medium pass
OBART08G22310.1 Phenylpropanoid HCT medium pass
OBART09G10620.1 Phenylpropanoid HCT medium pass
OBART10G00400.1 Phenylpropanoid HCT low borderline
OBART10G00970.1 Phenylpropanoid HCT low borderline
OBART10G00980.1 Phenylpropanoid HCT low borderline
OBART10G04810.1 Phenylpropanoid HCT low borderline
OBART10G14930.1 Phenylpropanoid HCT low borderline
OBART11G05020.1 Phenylpropanoid HCT medium pass
OBART11G14540.1 Phenylpropanoid HCT medium pass
OBART12G11370.1 Phenylpropanoid HCT low borderline
OBART12G11430.1 Phenylpropanoid HCT medium pass