PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Gene Pathway Family Confidence Status
OBART01G04900.1 Alkaloid 7DLGT low borderline
OBART01G04920.1 Alkaloid 7DLGT low borderline
OBART01G04920.2 Alkaloid 7DLGT high pass
OBART01G04920.3 Alkaloid 7DLGT low borderline
OBART01G04920.4 Alkaloid 7DLGT low borderline
OBART01G21600.1 Alkaloid 7DLGT low borderline
OBART01G23030.1 Alkaloid 7DLGT medium pass
OBART01G24040.1 Alkaloid 7DLGT low borderline
OBART01G24050.1 Alkaloid 7DLGT low borderline
OBART01G26900.1 Alkaloid 7DLGT low borderline
OBART01G26910.1 Alkaloid 7DLGT medium pass
OBART01G27600.1 Alkaloid 7DLGT low borderline
OBART01G30000.1 Alkaloid 7DLGT medium pass
OBART01G30050.1 Alkaloid 7DLGT low borderline
OBART01G30070.1 Alkaloid 7DLGT medium pass
OBART01G30080.1 Alkaloid 7DLGT medium pass
OBART01G30110.1 Alkaloid 7DLGT medium pass
OBART01G34320.1 Alkaloid 7DLGT low borderline
OBART01G38350.1 Alkaloid 7DLGT low borderline
OBART02G07850.1 Alkaloid 7DLGT medium pass
OBART02G08020.1 Alkaloid 7DLGT low borderline
OBART02G08040.1 Alkaloid 7DLGT low borderline
OBART02G08060.1 Alkaloid 7DLGT medium pass
OBART02G08080.1 Alkaloid 7DLGT low borderline
OBART02G10240.1 Alkaloid 7DLGT medium pass
OBART02G10280.1 Alkaloid 7DLGT medium pass
OBART02G16190.1 Alkaloid 7DLGT low borderline
OBART02G17040.1 Alkaloid 7DLGT high pass
OBART02G17050.1 Alkaloid 7DLGT medium pass
OBART02G21780.1 Alkaloid 7DLGT high pass
OBART02G21800.1 Alkaloid 7DLGT medium pass
OBART02G21810.1 Alkaloid 7DLGT high pass
OBART02G25160.1 Alkaloid 7DLGT low borderline
OBART02G33040.1 Alkaloid 7DLGT medium pass
OBART02G33050.1 Alkaloid 7DLGT medium pass
OBART02G33070.1 Alkaloid 7DLGT medium pass
OBART02G36370.1 Alkaloid 7DLGT low borderline
OBART03G17930.1 Alkaloid 7DLGT low borderline
OBART03G21390.1 Alkaloid 7DLGT medium pass
OBART03G27320.1 Alkaloid 7DLGT low borderline
OBART03G28680.1 Alkaloid 7DLGT low borderline
OBART03G30440.1 Alkaloid 7DLGT low borderline
OBART03G31010.1 Alkaloid 7DLGT low borderline
OBART03G31020.1 Alkaloid 7DLGT low borderline
OBART03G34740.1 Alkaloid 7DLGT low borderline
OBART03G34760.1 Alkaloid 7DLGT low borderline
OBART03G34770.1 Alkaloid 7DLGT medium pass
OBART03G37990.1 Alkaloid 7DLGT low borderline
OBART03G39370.1 Alkaloid 7DLGT medium pass
OBART03G40310.1 Alkaloid 7DLGT low borderline