PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
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Gene Pathway Family Confidence Status
OBART01G18300.1 Alkaloid PYKS low borderline
OBART01G21850.1 Alkaloid PYKS low borderline
OBART01G21860.1 Alkaloid PYKS medium pass
OBART02G08000.1 Alkaloid PYKS low borderline
OBART02G15420.1 Alkaloid PYKS low borderline
OBART02G31340.1 Alkaloid PYKS low borderline
OBART02G37010.1 Alkaloid PYKS low borderline
OBART03G04680.1 Alkaloid PYKS low borderline
OBART03G05970.1 Alkaloid PYKS low borderline
OBART03G08700.1 Alkaloid PYKS low borderline
OBART03G10360.1 Alkaloid PYKS low borderline
OBART03G19570.1 Alkaloid PYKS low borderline
OBART03G29130.1 Alkaloid PYKS medium pass
OBART04G00820.1 Alkaloid PYKS low borderline
OBART04G09280.1 Alkaloid PYKS high pass
OBART04G27110.1 Alkaloid PYKS low borderline
OBART05G07150.1 Alkaloid PYKS medium pass
OBART05G07160.1 Alkaloid PYKS high pass
OBART05G07190.1 Alkaloid PYKS high pass
OBART05G21530.1 Alkaloid PYKS medium pass
OBART05G26160.1 Alkaloid PYKS low borderline
OBART05G26640.1 Alkaloid PYKS low borderline
OBART06G10010.1 Alkaloid PYKS low borderline
OBART06G10050.1 Alkaloid PYKS low borderline
OBART06G20100.1 Alkaloid PYKS low borderline
OBART07G09740.1 Alkaloid PYKS medium pass
OBART07G11360.1 Alkaloid PYKS medium pass
OBART07G15320.1 Alkaloid PYKS high pass
OBART07G15330.1 Alkaloid PYKS medium pass
OBART07G16740.1 Alkaloid PYKS high pass
OBART07G16760.1 Alkaloid PYKS medium pass
OBART07G16790.1 Alkaloid PYKS high pass
OBART09G07310.1 Alkaloid PYKS low borderline
OBART10G02820.1 Alkaloid PYKS high pass
OBART10G03220.1 Alkaloid PYKS high pass
OBART10G03230.1 Alkaloid PYKS high pass
OBART10G03630.1 Alkaloid PYKS high pass
OBART10G03660.1 Alkaloid PYKS medium pass
OBART10G04030.1 Alkaloid PYKS high pass
OBART10G10000.1 Alkaloid PYKS low borderline
OBART10G12970.1 Alkaloid PYKS low borderline
OBART10G13730.1 Alkaloid PYKS medium pass
OBART11G15600.1 Alkaloid PYKS high pass
OBART11G15620.1 Alkaloid PYKS medium pass
OBART11G15630.1 Alkaloid PYKS medium pass
OBART11G15640.1 Alkaloid PYKS medium pass
OBART11G15650.1 Alkaloid PYKS medium pass
OBART11G15670.1 Alkaloid PYKS high pass
OBART11G17330.1 Alkaloid PYKS high pass
OBART12G04560.1 Alkaloid PYKS medium pass