PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COMT
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Gene Pathway Family Confidence Status
OBART01G31140.1 Phenylpropanoid COMT low borderline
OBART02G37810.1 Phenylpropanoid COMT medium pass
OBART04G02740.1 Phenylpropanoid COMT medium pass
OBART04G02760.1 Phenylpropanoid COMT medium pass
OBART04G02760.2 Phenylpropanoid COMT medium pass
OBART04G02770.1 Phenylpropanoid COMT medium pass
OBART04G03800.1 Phenylpropanoid COMT low borderline
OBART04G29630.1 Phenylpropanoid COMT low borderline
OBART05G09920.1 Phenylpropanoid COMT low borderline
OBART05G22680.1 Phenylpropanoid COMT medium pass
OBART05G22690.1 Phenylpropanoid COMT medium pass
OBART06G09030.1 Phenylpropanoid COMT low borderline
OBART06G10780.1 Phenylpropanoid COMT low borderline
OBART07G05030.1 Phenylpropanoid COMT low borderline
OBART07G13410.1 Phenylpropanoid COMT low borderline
OBART07G13490.1 Phenylpropanoid COMT low borderline
OBART07G13500.1 Phenylpropanoid COMT low borderline
OBART07G23990.1 Phenylpropanoid COMT low borderline
OBART07G24300.1 Phenylpropanoid COMT low borderline
OBART08G03420.1 Phenylpropanoid COMT medium pass
OBART08G04170.1 Phenylpropanoid COMT medium pass
OBART08G09390.1 Phenylpropanoid COMT medium pass
OBART08G17000.1 Phenylpropanoid COMT medium pass
OBART09G06540.1 Phenylpropanoid COMT medium pass
OBART10G00870.1 Phenylpropanoid COMT medium pass
OBART10G00900.1 Phenylpropanoid COMT medium pass
OBART10G03140.1 Phenylpropanoid COMT medium pass
OBART11G07680.1 Phenylpropanoid COMT medium pass
OBART11G10590.1 Phenylpropanoid COMT low borderline
OBART11G10690.1 Phenylpropanoid COMT low borderline
OBART11G10700.1 Phenylpropanoid COMT low borderline
OBART11G16110.1 Phenylpropanoid COMT medium pass
OBART12G05700.1 Phenylpropanoid COMT medium pass
OBART12G07130.1 Phenylpropanoid COMT medium pass
OBART12G10810.1 Phenylpropanoid COMT low borderline
OBART12G10830.1 Phenylpropanoid COMT medium pass
OBART12G10840.1 Phenylpropanoid COMT low borderline
OBART12G10960.1 Phenylpropanoid COMT medium pass
OBART12G18810.1 Phenylpropanoid COMT low borderline