PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
Reset
Gene Pathway Family Confidence Status
OBART01G42800.1 Alkaloid TRI/TRII low borderline
OBART03G11990.1 Alkaloid TRI/TRII low borderline
OBART03G11990.2 Alkaloid TRI/TRII medium pass
OBART03G12000.1 Alkaloid TRI/TRII medium pass
OBART03G14060.1 Alkaloid TRI/TRII medium pass
OBART03G24370.1 Alkaloid TRI/TRII low borderline
OBART03G28000.1 Alkaloid TRI/TRII low borderline
OBART03G28000.2 Alkaloid TRI/TRII low borderline
OBART03G34150.1 Alkaloid TRI/TRII low borderline
OBART03G38410.1 Alkaloid TRI/TRII medium pass
OBART03G39880.1 Alkaloid TRI/TRII low borderline
OBART04G02910.1 Alkaloid TRI/TRII medium pass
OBART04G02910.2 Alkaloid TRI/TRII medium pass
OBART04G02910.3 Alkaloid TRI/TRII medium pass
OBART04G05700.1 Alkaloid TRI/TRII medium pass
OBART04G05700.2 Alkaloid TRI/TRII medium pass
OBART04G05700.3 Alkaloid TRI/TRII medium pass
OBART04G09700.1 Alkaloid TRI/TRII medium pass
OBART04G11470.1 Alkaloid TRI/TRII medium pass
OBART04G14700.1 Alkaloid TRI/TRII low borderline
OBART04G19680.1 Alkaloid TRI/TRII low borderline
OBART05G02740.1 Alkaloid TRI/TRII low borderline
OBART06G04840.1 Alkaloid TRI/TRII low borderline
OBART06G05520.1 Alkaloid TRI/TRII low borderline
OBART07G18630.1 Alkaloid TRI/TRII medium pass
OBART07G20770.1 Alkaloid TRI/TRII medium pass
OBART07G25450.1 Alkaloid TRI/TRII medium pass
OBART07G25460.1 Alkaloid TRI/TRII low borderline
OBART07G25470.1 Alkaloid TRI/TRII low borderline
OBART07G25500.1 Alkaloid TRI/TRII medium pass
OBART07G25510.1 Alkaloid TRI/TRII medium pass
OBART07G25520.1 Alkaloid TRI/TRII low borderline
OBART07G25520.2 Alkaloid TRI/TRII low borderline
OBART07G27210.1 Alkaloid TRI/TRII medium pass
OBART08G04600.1 Alkaloid TRI/TRII low borderline
OBART09G01520.1 Alkaloid TRI/TRII medium pass
OBART10G12120.1 Alkaloid TRI/TRII medium pass
OBART11G09070.1 Alkaloid TRI/TRII low borderline
OBART11G11930.1 Alkaloid TRI/TRII medium pass
OBART11G11950.1 Alkaloid TRI/TRII medium pass
OBART11G11960.1 Alkaloid TRI/TRII medium pass
OBART11G11970.1 Alkaloid TRI/TRII medium pass
OBART11G11970.2 Alkaloid TRI/TRII medium pass
OBART11G11970.3 Alkaloid TRI/TRII medium pass
OBART11G12000.1 Alkaloid TRI/TRII medium pass
OBART11G12020.1 Alkaloid TRI/TRII medium pass
OBART11G12160.1 Alkaloid TRI/TRII medium pass
OBART11G15190.1 Alkaloid TRI/TRII medium pass
OBART11G21430.1 Alkaloid TRI/TRII medium pass
OBART12G07610.1 Alkaloid TRI/TRII medium pass