PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
OBART01G05720.1 Flavonoid F3H low borderline
OBART01G06970.1 Flavonoid F3H medium borderline
OBART01G14020.1 Flavonoid F3H low borderline
OBART01G14830.1 Flavonoid F3H medium borderline
OBART01G14850.1 Flavonoid F3H medium borderline
OBART01G15720.1 Flavonoid F3H medium borderline
OBART01G20560.1 Flavonoid F3H medium borderline
OBART01G30540.1 Flavonoid F3H low borderline
OBART01G31380.1 Flavonoid F3H medium borderline
OBART01G36130.1 Flavonoid F3H medium borderline
OBART01G39570.1 Flavonoid F3H medium borderline
OBART01G43160.1 Flavonoid F3H medium borderline
OBART02G11720.1 Flavonoid F3H low borderline
OBART02G12330.1 Flavonoid F3H medium borderline
OBART02G12330.2 Flavonoid F3H medium borderline
OBART02G22420.1 Flavonoid F3H medium pass
OBART02G24970.1 Flavonoid F3H low borderline
OBART02G33830.1 Flavonoid F3H medium borderline
OBART02G34120.1 Flavonoid F3H medium borderline
OBART03G01760.1 Flavonoid F3H medium borderline
OBART03G13450.1 Flavonoid F3H medium borderline
OBART03G22670.1 Flavonoid F3H medium borderline
OBART03G22690.2 Flavonoid F3H low borderline
OBART03G26200.1 Flavonoid F3H medium borderline
OBART03G41540.1 Flavonoid F3H medium borderline
OBART03G41580.1 Flavonoid F3H medium pass
OBART03G41820.1 Flavonoid F3H medium borderline
OBART04G03070.1 Flavonoid F3H medium pass
OBART04G03080.1 Flavonoid F3H medium borderline
OBART04G11610.1 Flavonoid F3H low borderline
OBART04G19030.1 Flavonoid F3H medium borderline
OBART04G22830.1 Flavonoid F3H medium borderline
OBART04G22840.1 Flavonoid F3H medium borderline
OBART04G27120.1 Flavonoid F3H medium borderline
OBART04G28440.1 Flavonoid F3H medium borderline
OBART04G28770.1 Flavonoid F3H medium borderline
OBART04G28790.1 Flavonoid F3H medium borderline
OBART05G01970.1 Flavonoid F3H medium borderline
OBART05G03390.1 Flavonoid F3H medium borderline
OBART05G04100.1 Flavonoid F3H low borderline
OBART05G05200.1 Flavonoid F3H medium borderline
OBART05G06920.1 Flavonoid F3H medium borderline
OBART05G09240.1 Flavonoid F3H medium pass
OBART05G16950.1 Flavonoid F3H low borderline
OBART05G22620.1 Flavonoid F3H medium borderline
OBART05G25620.1 Flavonoid F3H low borderline
OBART06G04140.1 Flavonoid F3H medium borderline
OBART06G09690.1 Flavonoid F3H medium borderline
OBART06G19130.1 Flavonoid F3H medium borderline
OBART07G00270.1 Flavonoid F3H low borderline