PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T16H
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Gene Pathway Family Confidence Status
OBART01G07980.1 Alkaloid T16H low borderline
OBART01G08010.1 Alkaloid T16H medium pass
OBART01G14730.1 Alkaloid T16H medium borderline
OBART02G06490.1 Alkaloid T16H medium borderline
OBART02G06530.1 Alkaloid T16H medium borderline
OBART02G12230.1 Alkaloid T16H medium borderline
OBART02G16220.1 Alkaloid T16H medium borderline
OBART02G16230.1 Alkaloid T16H medium borderline
OBART03G22840.1 Alkaloid T16H medium borderline
OBART03G23480.1 Alkaloid T16H medium borderline
OBART04G22140.1 Alkaloid T16H medium borderline
OBART05G13350.1 Alkaloid T16H medium borderline
OBART05G16580.1 Alkaloid T16H medium borderline
OBART05G16590.1 Alkaloid T16H medium borderline
OBART06G06570.1 Alkaloid T16H medium borderline
OBART06G22330.1 Alkaloid T16H medium borderline
OBART06G22330.2 Alkaloid T16H medium borderline
OBART06G22350.1 Alkaloid T16H medium borderline
OBART06G22380.1 Alkaloid T16H low borderline
OBART06G22380.2 Alkaloid T16H medium borderline
OBART06G22390.1 Alkaloid T16H medium borderline
OBART06G22410.1 Alkaloid T16H medium borderline
OBART06G22440.1 Alkaloid T16H medium borderline
OBART07G07310.1 Alkaloid T16H medium borderline
OBART07G10610.1 Alkaloid T16H medium borderline
OBART08G00420.1 Alkaloid T16H medium borderline
OBART08G08100.1 Alkaloid T16H low borderline
OBART08G17870.1 Alkaloid T16H medium borderline
OBART08G19890.1 Alkaloid T16H medium borderline
OBART09G12760.1 Alkaloid T16H medium borderline
OBART10G03820.1 Alkaloid T16H medium borderline
OBART10G05550.1 Alkaloid T16H medium borderline
OBART10G05570.1 Alkaloid T16H medium borderline
OBART10G15640.1 Alkaloid T16H low borderline
OBART11G09890.1 Alkaloid T16H medium borderline
OBART11G09890.2 Alkaloid T16H medium borderline
OBART11G15310.1 Alkaloid T16H medium borderline