PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Rosmarinic acid pathway
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Gene Pathway Family Confidence Status
OBART01G14350.1 Rosmarinic Acid 4CL medium pass
OBART01G23930.1 Rosmarinic Acid 4CL low borderline
OBART01G25130.1 Rosmarinic Acid 4CL low borderline
OBART01G26650.1 Rosmarinic Acid 4CL low borderline
OBART01G31790.1 Rosmarinic Acid 4CL low borderline
OBART01G31790.2 Rosmarinic Acid 4CL low borderline
OBART01G40730.1 Rosmarinic Acid 4CL medium pass
OBART01G40730.2 Rosmarinic Acid 4CL medium pass
OBART02G01430.1 Rosmarinic Acid 4CL medium pass
OBART02G05870.1 Rosmarinic Acid 4CL medium pass
OBART02G18710.1 Rosmarinic Acid 4CL low borderline
OBART02G24240.1 Rosmarinic Acid 4CL medium pass
OBART02G28930.1 Rosmarinic Acid 4CL medium pass
OBART02G37730.1 Rosmarinic Acid 4CL low borderline
OBART03G02390.1 Rosmarinic Acid 4CL medium pass
OBART03G02550.1 Rosmarinic Acid 4CL medium pass
OBART03G02670.1 Rosmarinic Acid 4CL low borderline
OBART03G04080.1 Rosmarinic Acid 4CL medium pass
OBART03G14460.1 Rosmarinic Acid 4CL medium pass
OBART03G14470.1 Rosmarinic Acid 4CL medium pass
OBART03G40810.1 Rosmarinic Acid 4CL low borderline
OBART03G40810.2 Rosmarinic Acid 4CL low borderline
OBART03G40810.3 Rosmarinic Acid 4CL low borderline
OBART03G40810.4 Rosmarinic Acid 4CL low borderline
OBART03G40810.5 Rosmarinic Acid 4CL low borderline
OBART04G07180.1 Rosmarinic Acid 4CL medium pass
OBART04G11430.1 Rosmarinic Acid 4CL low borderline
OBART04G26430.1 Rosmarinic Acid 4CL low borderline
OBART04G29410.1 Rosmarinic Acid 4CL medium pass
OBART04G30120.1 Rosmarinic Acid 4CL medium pass
OBART05G02260.1 Rosmarinic Acid 4CL low borderline
OBART05G02260.2 Rosmarinic Acid 4CL low borderline
OBART05G11400.1 Rosmarinic Acid 4CL low borderline
OBART06G03810.1 Rosmarinic Acid 4CL low borderline
OBART06G23310.1 Rosmarinic Acid 4CL medium pass
OBART07G23680.1 Rosmarinic Acid 4CL medium pass
OBART08G01930.1 Rosmarinic Acid 4CL low borderline
OBART08G02630.1 Rosmarinic Acid 4CL medium pass
OBART08G07460.1 Rosmarinic Acid 4CL medium pass
OBART08G16570.1 Rosmarinic Acid 4CL medium pass
OBART09G19190.1 Rosmarinic Acid 4CL medium pass
OBART10G19730.1 Rosmarinic Acid 4CL medium pass
OBART10G19730.2 Rosmarinic Acid 4CL medium pass
OBART11G02990.1 Rosmarinic Acid 4CL low borderline
OBART11G02990.2 Rosmarinic Acid 4CL low borderline
OBART11G02990.3 Rosmarinic Acid 4CL low borderline
OBART11G04390.1 Rosmarinic Acid 4CL low borderline
OBART11G17090.1 Rosmarinic Acid 4CL low borderline
OBART12G02670.1 Rosmarinic Acid 4CL low borderline
OBART12G02670.2 Rosmarinic Acid 4CL low borderline