PlantSME Plant secondary metabolism enzyme database

Oryza barthii (oryza_barthii)

Imported from atlas release summary for Oryza barthii.

1727
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 508 19 BAHD (188) View species results
Alkaloid pathway 436 26 7DLGT (63) View species results
Phenylpropanoid pathway 274 12 POD (93) View species results
Flavonoid pathway 242 12 UFGT (132) View species results
Rosmarinic acid pathway 140 7 C4H (68) View species results
Steroid pathway 127 14 CAS (47) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1780 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 344 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
OBART01G05720.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART01G06970.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART01G14830.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART03G22690.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART03G22690.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART04G22830.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART04G23620.1 Alkaloid NCS medium pass NCS__00005__sp_Q67A25_NCS_THLFG
OBART04G23630.1 Alkaloid NCS medium pass NCS__00003__sp_Q4QTJ1_NCS2_PAPSO
OBART04G27120.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART04G28770.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART04G28790.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART05G03380.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART06G05010.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART09G07030.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART09G07030.2 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART09G07030.3 Alkaloid NCS medium pass NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART09G07060.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART09G12370.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G16190.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18280.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18310.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18320.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18340.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18360.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18370.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
OBART10G18390.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA