PlantSME Plant secondary metabolism enzyme database
PAL

PAL

Phenylpropanoid-entry shared module: PAL/4CL/C4H are expected shared entry families across phenylpropanoid-derived libraries.

Atlas summary family PAL.

Lineage Coverage
Detected in 752 of 789 public species; click a lineage to inspect its species list.
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Flavonoid pathway 7015 current-family members Mao et al. 2025; Gulzar et al. 2024; Vogt 2010
Phenylpropanoid entry
Flavonoid scaffold formation
Flavone and isoflavonoid branches
Anthocyanin and proanthocyanidin branches
Phenylpropanoid pathway 7015 current-family members Vogt 2010; Vanholme et al. 2013; Tobimatsu & Schuetz 2019; Zhao et al. 2013
Rosmarinic acid pathway 7015 current-family members Petersen & Simmonds 2003; Huang et al. 2008; Kim et al. 2004; Berger et al. 2006; Eberle et al. 2009
Phenylalanine donor branch
Tyrosine acceptor branch
Condensation and hydroxylation
Family Gene List
GeneSpeciesProtein ID
CLame656810053510 climacium_americanum CLame656810053510
CLame658050061090 climacium_americanum CLame658050061090
CLame660170077600 climacium_americanum CLame660170077600
CLame660760082670 climacium_americanum CLame660760082670
CLame661330087710 climacium_americanum CLame661330087710
CLame666570166860 climacium_americanum CLame666570166860
CLame667280185020 climacium_americanum CLame667280185020
CLame670680240790 climacium_americanum CLame670680240790
Cnucscaffold14270052250 cocos_nucifera Cnucscaffold14270052250
Cnucscaffold14270052260 cocos_nucifera Cnucscaffold14270052260
Cnucscaffold25480120290 cocos_nucifera Cnucscaffold25480120290
Cnucscaffold25480120300 cocos_nucifera Cnucscaffold25480120300
Cnucscaffold55400209320 cocos_nucifera Cnucscaffold55400209320
Cnucscaffold73610245360 cocos_nucifera Cnucscaffold73610245360
Cnucscaffold88970268010 cocos_nucifera Cnucscaffold88970268010
codonopsis_lanceolata_Cl_C16175_unscaffolded_00020T codonopsis_lanceolata codonopsis_lanceolata_Cl_C16175_unscaffolded_00020T
codonopsis_lanceolata_Cl_chr02_64290T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr02_64290T
codonopsis_lanceolata_Cl_chr04_32880T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr04_32880T
codonopsis_lanceolata_Cl_chr05_28010T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr05_28010T
codonopsis_lanceolata_Cl_chr05_28040T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr05_28040T
codonopsis_lanceolata_Cl_chr06_22420T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr06_22420T
codonopsis_lanceolata_Cl_chr07_29450T codonopsis_lanceolata codonopsis_lanceolata_Cl_chr07_29450T
Ccane01G0010880.1 coffea_canephora Ccane01G0010880.1
Ccane02G0011230.1 coffea_canephora Ccane02G0011230.1
Ccane06G0003980.1 coffea_canephora Ccane06G0003980.1
Ccanescaffold_10140000160.1 coffea_canephora Ccanescaffold_10140000160.1
Ccanescaffold_15860006940.1 coffea_canephora Ccanescaffold_15860006940.1
coix_lacryma-jobi_GWHPAAYR002871 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR002871
coix_lacryma-jobi_GWHPAAYR002872 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR002872
coix_lacryma-jobi_GWHPAAYR002875 coix_lacryma_jobi coix_lacryma-jobi_GWHPAAYR002875