PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
Fossombronia841560342840 fossombronia Fossombronia841560342840
FanaFAN_r2.3ch00078880 fragaria_ananassa FanaFAN_r2.3ch00078880
FanaFAN_r2.3ch2Ava0521890 fragaria_ananassa FanaFAN_r2.3ch2Ava0521890
FanaFAN_r2.3ch2Avb0555600 fragaria_ananassa FanaFAN_r2.3ch2Avb0555600
FanaFAN_r2.3ch2Bia0576530 fragaria_ananassa FanaFAN_r2.3ch2Bia0576530
FanaFAN_r2.3ch2Bib0599410 fragaria_ananassa FanaFAN_r2.3ch2Bib0599410
FanaFAN_r2.3ch2Bib0599800 fragaria_ananassa FanaFAN_r2.3ch2Bib0599800
FanaFAN_r2.3ch2X1a0614790 fragaria_ananassa FanaFAN_r2.3ch2X1a0614790
FanaFAN_r2.3ch2X1a0620070 fragaria_ananassa FanaFAN_r2.3ch2X1a0620070
FanaFAN_r2.3ch2X1b0642770 fragaria_ananassa FanaFAN_r2.3ch2X1b0642770
fragaria_chiloensis_maker-2A-augustus-gene-121.195-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2A-augustus-gene-121.195-mRNA-1
fragaria_chiloensis_maker-2B-augustus-gene-164.4-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2B-augustus-gene-164.4-mRNA-1
fragaria_chiloensis_maker-2C-augustus-gene-128.8-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-augustus-gene-128.8-mRNA-1
fragaria_chiloensis_maker-2C-augustus-gene-131.7-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2C-augustus-gene-131.7-mRNA-1
fragaria_chiloensis_maker-2D-augustus-gene-49.17-mRNA-1 fragaria_chiloensis fragaria_chiloensis_maker-2D-augustus-gene-49.17-mRNA-1
fragaria_iinumae_evm.model.scaf_4.1899 fragaria_iinumae fragaria_iinumae_evm.model.scaf_4.1899
fragaria_mandshurica_evm.model.chr1.2568 fragaria_mandshurica fragaria_mandshurica_evm.model.chr1.2568
fragaria_mandshurica_evm.model.chr2.1542 fragaria_mandshurica fragaria_mandshurica_evm.model.chr2.1542
fragaria_mandshurica_evm.model.chr3.1604 fragaria_mandshurica fragaria_mandshurica_evm.model.chr3.1604
FnilGWHABKC000000040158540.1 fragaria_nilgerrensis FnilGWHABKC000000040158540.1
fragaria_nipponica_augustus_masked-chr2-processed-gene-150.11-mRNA-1 fragaria_nipponica fragaria_nipponica_augustus_masked-chr2-processed-gene-150.11-mRNA-1
fragaria_nubicola_evm.model.ctg109.458 fragaria_nubicola fragaria_nubicola_evm.model.ctg109.458
Fves02G0026990.1 fragaria_vesca Fves02G0026990.1
Fves02G0026990.2 fragaria_vesca Fves02G0026990.2
Fves02G0026990.3 fragaria_vesca Fves02G0026990.3
Fves02G0026990.4 fragaria_vesca Fves02G0026990.4
Fves02G0026990.5 fragaria_vesca Fves02G0026990.5
fragaria_x_ananassa_augustus_masked-Fvb2-2-processed-gene-76.1-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_augustus_masked-Fvb2-2-processed-gene-76.1-mRNA-1
fragaria_x_ananassa_augustus_masked-Fvb2-3-processed-gene-112.15-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_augustus_masked-Fvb2-3-processed-gene-112.15-mRNA-1
fragaria_x_ananassa_maker-Fvb2-1-augustus-gene-133.31-mRNA-1 fragaria_x_ananassa fragaria_x_ananassa_maker-Fvb2-1-augustus-gene-133.31-mRNA-1