PlantSME Plant secondary metabolism enzyme database
TDC

TDC

Atlas summary family TDC.

Lineage Coverage
Detected in 29 of 789 public species; click a lineage to inspect its species list.
Algae
Bryophytes
Lycophytes/Ferns
Gymnosperms
Basal angiosperms
Monocots
Eudicots
Species Distribution
Miscanthus lutarioriparius
Chrysanthemum seticuspe
Zoysia matrella
Aegilops tauschii
Related Modules
Alkaloid pathway
Pathway Position Map
Pathways are arranged by literature-curated biosynthetic stages and highlight the current enzyme family; branched pathways are grouped by stage rather than forced into one linear reaction chain.
Curated order
Alkaloid pathway 33 current-family members Facchini 2001; Hagel & Facchini 2013; Guirimand et al. 2014; Shoji et al. 2024; Ashihara et al. 2008
BIA benzylisoquinoline entry
TYDC_DDC 49 NCS 2188 6OMT_4OMT_SOMT 585 CNMT 1103 CYP80B1 109
BIA downstream branches
CYP719 57 COR 12777 CODM/T6ODM 213
MIA terpenoid and indole precursors
GES 29176 G8O/G8H 1896 8HGO 1497 ISY 4217 IO 1721 7DLGT 55281 7DLH 341 LAMT 943 SLS 426 TDC 33
MIA post-strictosidine branches
STR 16085 SGD 25978 GS 15620 T16H 895 16OMT 111 T3O 29276 NMT 40796
Nicotine, tropane, and purine branches
ODC 1268 ADC 2008 PMT 9370 MPO 6100 PYKS 11713 TRI/TRII 28608 H6H 6749 CYP80F1 15 XMT_MXMT_DXMT 70
Family Gene List
GeneSpeciesProtein ID
PyezPY_10034420 pyropia_yezoensis PyezPY_10034420
Pspiscaffold_10006730 pyrrhobryum_spiniforme Pspiscaffold_10006730
Pspiscaffold_50112780 pyrrhobryum_spiniforme Pspiscaffold_50112780
Pspiscaffold_80217210 pyrrhobryum_spiniforme Pspiscaffold_80217210
Pspiscaffold_80225190 pyrrhobryum_spiniforme Pspiscaffold_80225190
GWHPAAYT002532 pyrus_betuleafolia GWHPAAYT002532
GWHPAAYT005159 pyrus_betuleafolia GWHPAAYT005159
GWHPAAYT025314 pyrus_betuleafolia GWHPAAYT025314
GWHPAAYT040580 pyrus_betuleafolia GWHPAAYT040580
GWHPAAYT041580 pyrus_betuleafolia GWHPAAYT041580
Pbre05G0002210 pyrus_bretschneideri Pbre05G0002210
Pbre10G0019320 pyrus_bretschneideri Pbre10G0019320
Pbre10G0019460 pyrus_bretschneideri Pbre10G0019460
Pbrescaffold333.00033130 pyrus_bretschneideri Pbrescaffold333.00033130
PYcom10G0001310.1 pyrus_communis PYcom10G0001310.1
PYcom16G0007330.1 pyrus_communis PYcom16G0007330.1
pyrus_ussuriensis_x_communis_Pdr10g015320.1 pyrus_ussuriensis_x_communis pyrus_ussuriensis_x_communis_Pdr10g015320.1
pyrus_ussuriensis_x_communis_Pdr10g027090.1 pyrus_ussuriensis_x_communis pyrus_ussuriensis_x_communis_Pdr10g027090.1
pyrus_ussuriensis_x_communis_Pdr16g008180.1 pyrus_ussuriensis_x_communis pyrus_ussuriensis_x_communis_Pdr16g008180.1
pyrus_ussuriensis_x_communis_Pdr5g001880.1 pyrus_ussuriensis_x_communis pyrus_ussuriensis_x_communis_Pdr5g001880.1
pyrus_ussuriensis_x_communis_Pdr5g008860.1 pyrus_ussuriensis_x_communis pyrus_ussuriensis_x_communis_Pdr5g008860.1
quercus_dentata_GWHPBRAD003786 quercus_dentata quercus_dentata_GWHPBRAD003786
quercus_dentata_GWHPBRAD014385 quercus_dentata quercus_dentata_GWHPBRAD014385
quercus_dentata_GWHPBRAD014388 quercus_dentata quercus_dentata_GWHPBRAD014388
quercus_dentata_GWHPBRAD016989 quercus_dentata quercus_dentata_GWHPBRAD016989
quercus_dentata_GWHPBRAD020347 quercus_dentata quercus_dentata_GWHPBRAD020347
quercus_dentata_GWHPBRAD023741 quercus_dentata quercus_dentata_GWHPBRAD023741
quercus_dentata_GWHPBRAD027572 quercus_dentata quercus_dentata_GWHPBRAD027572
quercus_dentata_GWHPBRAD031154 quercus_dentata quercus_dentata_GWHPBRAD031154
quercus_lobata_QL02p024176 quercus_lobata quercus_lobata_QL02p024176