PlantSME Plant secondary metabolism enzyme database

Aethionema arabicum (aethionema_arabicum)

Imported from atlas release summary for Aethionema arabicum.

1390
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.17% Phenylpropanoid pathway 20.65% Alkaloid pathway 20.14% Flavonoid pathway 11.22% Rosmarinic acid pathway 7.77% Steroid pathway 7.05%
Family Distribution
BAHD 8.59% C4H 5.97% C3'H/CYP98A 5.73% POD 3.93% CYP76 3.93% 4CL 3.67% UGT 3.2% IFS 3.17%
Other Families 61.82%
More Families (94)
7DLGT 105 3.06% UFGT 105 3.06% NMT 96 2.79% T3O 94 2.74% DWF4/CYP90B1 85 2.47% SMT1/SMT2/SMT3 78 2.27% SGD 72 2.1% F3'H/CYP75B 72 2.1% BR6OX2/CYP85A2 69 2.01% F3H 64 1.86% STR 57 1.66% COMT 49 1.43% TPS 46 1.34% CODM/T6ODM 45 1.31% SLS 43 1.25% CYP71 42 1.22% HCT 40 1.16% CAD 38 1.11% CSE 38 1.11% TAT 36 1.05% TRI/TRII 35 1.02% PYKS 34 0.99% GES 33 0.96% CAS 33 0.96% IFR 32 0.93% T16H 30 0.87% F3'5'H/CYP75A 30 0.87% CYP90D1 29 0.84% H6H 28 0.81% 16OMT 26 0.76% IO 25 0.73% F5H/CYP84A 25 0.73% RAS 25 0.73% FNS 22 0.64% GS 21 0.61% LAC 21 0.61% G8O/G8H 18 0.52% BBE 17 0.49% PMT 17 0.49% 8HGO 17 0.49% ANR 17 0.49% BR6OX1/CYP85A1 17 0.49% CCR 16 0.47% LAMT 15 0.44% CPD/CYP90A1 14 0.41% FPPS 14 0.41% SMO1/SMO2 13 0.38% GGPPS 13 0.38% COR 12 0.35% CYP80B1 10 0.29% CYP719 9 0.26% ANS/LDOX 9 0.26% 7DLH 8 0.23% CPR 8 0.23% SQE 8 0.23% CNMT 7 0.2% MPO 7 0.2% DFR 7 0.2% SQS/FDFT1 7 0.2% CYP51G1 7 0.2% AACT 7 0.2% NCS 6 0.17% PAL 6 0.17% CCoAOMT 6 0.17% ROT3/CYP90C1 6 0.17% MVD 6 0.17% CHS 5 0.15% HPPR 5 0.15% DET2 5 0.15% MVK 5 0.15% TYDC_DDC 4 0.12% XMT_MXMT_DXMT 4 0.12% DWF5 4 0.12% DWF7 4 0.12% CMK/IspE 4 0.12% DXR 3 0.09% IDI 3 0.09% DXS 3 0.09% ISY 2 0.06% CYP80F1 2 0.06% TDC 2 0.06% ADC 2 0.06% CHI 2 0.06% HYD1 2 0.06% HDR/IspH 2 0.06% HDS/IspG 2 0.06% HMGR 2 0.06% PMK 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 19 BAHD (231) View species results
Phenylpropanoid pathway 287 11 POD (118) View species results
Alkaloid pathway 280 19 SGD (59) View species results
Flavonoid pathway 156 8 UFGT (101) View species results
Rosmarinic acid pathway 108 7 C4H (33) View species results
Steroid pathway 98 10 SMT1/SMT2/SMT3 (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1281 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 360 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CPD/CYP90A1
Reset
Gene Pathway Family Confidence Status
AaraAA_C1521950026760 Steroid CPD/CYP90A1 low borderline
AaraAA_C1787130044540 Steroid CPD/CYP90A1 medium borderline
AaraAA_C1793450044910 Steroid CPD/CYP90A1 low borderline
AaraAA_C1889230051190 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold10610056460 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold12210071380 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold19410106840 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold2130114980 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold34830177450 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold34870178930 Steroid CPD/CYP90A1 medium borderline
AaraAA_scaffold38150197430 Steroid CPD/CYP90A1 low borderline
AaraAA_scaffold490244260 Steroid CPD/CYP90A1 medium borderline
AaraAA_scaffold490244480 Steroid CPD/CYP90A1 medium borderline
AaraAA_scaffold60660319730 Steroid CPD/CYP90A1 low borderline