PlantSME Plant secondary metabolism enzyme database

Aethionema arabicum (aethionema_arabicum)

Imported from atlas release summary for Aethionema arabicum.

1390
Candidate Genes
102
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 33.17% Phenylpropanoid pathway 20.65% Alkaloid pathway 20.14% Flavonoid pathway 11.22% Rosmarinic acid pathway 7.77% Steroid pathway 7.05%
Family Distribution
BAHD 8.59% C4H 5.97% C3'H/CYP98A 5.73% POD 3.93% CYP76 3.93% 4CL 3.67% UGT 3.2% IFS 3.17%
Other Families 61.82%
More Families (94)
7DLGT 105 3.06% UFGT 105 3.06% NMT 96 2.79% T3O 94 2.74% DWF4/CYP90B1 85 2.47% SMT1/SMT2/SMT3 78 2.27% SGD 72 2.1% F3'H/CYP75B 72 2.1% BR6OX2/CYP85A2 69 2.01% F3H 64 1.86% STR 57 1.66% COMT 49 1.43% TPS 46 1.34% CODM/T6ODM 45 1.31% SLS 43 1.25% CYP71 42 1.22% HCT 40 1.16% CAD 38 1.11% CSE 38 1.11% TAT 36 1.05% TRI/TRII 35 1.02% PYKS 34 0.99% GES 33 0.96% CAS 33 0.96% IFR 32 0.93% T16H 30 0.87% F3'5'H/CYP75A 30 0.87% CYP90D1 29 0.84% H6H 28 0.81% 16OMT 26 0.76% IO 25 0.73% F5H/CYP84A 25 0.73% RAS 25 0.73% FNS 22 0.64% GS 21 0.61% LAC 21 0.61% G8O/G8H 18 0.52% BBE 17 0.49% PMT 17 0.49% 8HGO 17 0.49% ANR 17 0.49% BR6OX1/CYP85A1 17 0.49% CCR 16 0.47% LAMT 15 0.44% CPD/CYP90A1 14 0.41% FPPS 14 0.41% SMO1/SMO2 13 0.38% GGPPS 13 0.38% COR 12 0.35% CYP80B1 10 0.29% CYP719 9 0.26% ANS/LDOX 9 0.26% 7DLH 8 0.23% CPR 8 0.23% SQE 8 0.23% CNMT 7 0.2% MPO 7 0.2% DFR 7 0.2% SQS/FDFT1 7 0.2% CYP51G1 7 0.2% AACT 7 0.2% NCS 6 0.17% PAL 6 0.17% CCoAOMT 6 0.17% ROT3/CYP90C1 6 0.17% MVD 6 0.17% CHS 5 0.15% HPPR 5 0.15% DET2 5 0.15% MVK 5 0.15% TYDC_DDC 4 0.12% XMT_MXMT_DXMT 4 0.12% DWF5 4 0.12% DWF7 4 0.12% CMK/IspE 4 0.12% DXR 3 0.09% IDI 3 0.09% DXS 3 0.09% ISY 2 0.06% CYP80F1 2 0.06% TDC 2 0.06% ADC 2 0.06% CHI 2 0.06% HYD1 2 0.06% HDR/IspH 2 0.06% HDS/IspG 2 0.06% HMGR 2 0.06% PMK 2 0.06% MDS/IspF 2 0.06% MCT/IspD 2 0.06% DWF1 1 0.03% FK 1 0.03% CPI1 1 0.03% HMGS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 461 19 BAHD (231) View species results
Phenylpropanoid pathway 287 11 POD (118) View species results
Alkaloid pathway 280 19 SGD (59) View species results
Flavonoid pathway 156 8 UFGT (101) View species results
Rosmarinic acid pathway 108 7 C4H (33) View species results
Steroid pathway 98 10 SMT1/SMT2/SMT3 (46) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1281 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 360 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
AaraAA_C1715630039850 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_C1790130044690 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_scaffold10610056380 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
AaraAA_scaffold10610056400 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
AaraAA_scaffold10610056410 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
AaraAA_scaffold12100069200 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
AaraAA_scaffold1220070430 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_scaffold12210071430 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
AaraAA_scaffold13930076470 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
AaraAA_scaffold16840090840 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_scaffold20400112940 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_scaffold22500120050 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
AaraAA_scaffold25810142120 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO
AaraAA_scaffold27780149720 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
AaraAA_scaffold41000208390 Alkaloid G8O/G8H low borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
AaraAA_scaffold67710352530 Alkaloid G8O/G8H medium borderline G8O_G8H__00001__sp_A0A2H4DGV8_C7BL6_INUHU
AaraAA_scaffold7130358790 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
AaraAA_scaffold8710367400 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU