PlantSME Plant secondary metabolism enzyme database

Amaranthus cruentus (amaranthus_cruentus)

Imported from atlas release summary for Amaranthus cruentus.

2058
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 32.36% Alkaloid pathway 23.91% Phenylpropanoid pathway 16.57% Flavonoid pathway 10.59% Steroid pathway 8.55% Rosmarinic acid pathway 8.02%
Family Distribution
BAHD 8.43% NMT 5.67% C4H 5.5% C3'H/CYP98A 5.14% 4CL 4.84% UGT 3.76% IFS 3.46% POD 3.31%
Other Families 59.89%
More Families (97)
UFGT 151 3.25% 7DLGT 147 3.16% CYP76 144 3.1% T3O 125 2.69% F3H 106 2.28% DWF4/CYP90B1 99 2.13% SMT1/SMT2/SMT3 92 1.98% STR 83 1.78% CAD 80 1.72% F3'H/CYP75B 79 1.7% IFR 70 1.5% CODM/T6ODM 67 1.44% BR6OX2/CYP85A2 67 1.44% RAS 57 1.23% CAS 57 1.23% SGD 54 1.16% CYP71 52 1.12% H6H 51 1.1% SLS 48 1.03% GS 47 1.01% PMT 44 0.95% HCT 42 0.9% 7DLH 40 0.86% ANR 40 0.86% PYKS 37 0.8% TRI/TRII 35 0.75% CYP90D1 33 0.71% LAC 32 0.69% T16H 28 0.6% BBE 28 0.6% NCS 27 0.58% CPD/CYP90A1 27 0.58% TAT 25 0.54% GGPPS 25 0.54% AACT 25 0.54% COMT 24 0.52% CSE 24 0.52% 8HGO 22 0.47% CNMT 22 0.47% SQE 22 0.47% FNS 21 0.45% CCR 21 0.45% FPPS 21 0.45% DFR 19 0.41% TPS 19 0.41% MVK 18 0.39% 16OMT 17 0.37% CYP51G1 17 0.37% G8O/G8H 16 0.34% MVD 16 0.34% GES 15 0.32% IO 15 0.32% COR 14 0.3% CCoAOMT 14 0.3% CPR 14 0.3% MPO 13 0.28% CYP80B1 12 0.26% ANS/LDOX 12 0.26% ROT3/CYP90C1 11 0.24% SQS/FDFT1 11 0.24% MCT/IspD 11 0.24% CHS 10 0.21% F5H/CYP84A 10 0.21% SMO1/SMO2 10 0.21% PAL 9 0.19% BR6OX1/CYP85A1 9 0.19% FLS 8 0.17% FK 8 0.17% DXS 8 0.17% 6OMT_4OMT_SOMT 7 0.15% F3'5'H/CYP75A 7 0.15% HPPR 7 0.15% IDI 7 0.15% PMK 7 0.15% ISY 6 0.13% HMGR 6 0.13% LAMT 5 0.11% XMT_MXMT_DXMT 5 0.11% HDS/IspG 5 0.11% TDC 4 0.09% ADC 4 0.09% TYDC_DDC 4 0.09% HMGS 4 0.09% DXR 4 0.09% CYP80F1 3 0.06% DWF1 3 0.06% DET2 3 0.06% CYP719 2 0.04% CHI 2 0.04% CPI1 2 0.04% HYD1 2 0.04% DWF7 2 0.04% HDR/IspH 2 0.04% MDS/IspF 2 0.04% CMK/IspE 2 0.04% ODC 1 0.02% DWF5 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 666 19 BAHD (339) View species results
Alkaloid pathway 492 23 NMT (179) View species results
Phenylpropanoid pathway 341 11 POD (152) View species results
Flavonoid pathway 218 12 UFGT (139) View species results
Steroid pathway 176 11 SMT1/SMT2/SMT3 (66) View species results
Rosmarinic acid pathway 165 7 C4H (56) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1500 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 491 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
AcruScioBoG_102839_HRSCAF_1030930047780.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AcruScioBoG_11560_HRSCAF_116090075670.2 Flavonoid PAL high pass PAL__00005__sp_Q50EX7_PAL1_PETHY
AcruScioBoG_52287_HRSCAF_524340220580.1 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AcruScioBoG_102839_HRSCAF_1030930047780.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AcruScioBoG_11560_HRSCAF_116090075670.2 Phenylpropanoid PAL high pass PAL__00005__sp_Q50EX7_PAL1_PETHY
AcruScioBoG_52287_HRSCAF_524340220580.1 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AcruScioBoG_102839_HRSCAF_1030930047780.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
AcruScioBoG_11560_HRSCAF_116090075670.2 Rosmarinic Acid PAL high pass PAL__00005__sp_Q50EX7_PAL1_PETHY
AcruScioBoG_52287_HRSCAF_524340220580.1 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR