Amaranthus cruentus (amaranthus_cruentus)
Imported from atlas release summary for Amaranthus cruentus.
2058
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2058
Candidate Genes
BAHD
8.43%
NMT
5.67%
C4H
5.5%
C3'H/CYP98A
5.14%
4CL
4.84%
UGT
3.76%
IFS
3.46%
POD
3.31%
Other Families
59.89%
More Families (97)
UFGT
151
3.25%
7DLGT
147
3.16%
CYP76
144
3.1%
T3O
125
2.69%
F3H
106
2.28%
DWF4/CYP90B1
99
2.13%
SMT1/SMT2/SMT3
92
1.98%
STR
83
1.78%
CAD
80
1.72%
F3'H/CYP75B
79
1.7%
IFR
70
1.5%
CODM/T6ODM
67
1.44%
BR6OX2/CYP85A2
67
1.44%
RAS
57
1.23%
CAS
57
1.23%
SGD
54
1.16%
CYP71
52
1.12%
H6H
51
1.1%
SLS
48
1.03%
GS
47
1.01%
PMT
44
0.95%
HCT
42
0.9%
7DLH
40
0.86%
ANR
40
0.86%
PYKS
37
0.8%
TRI/TRII
35
0.75%
CYP90D1
33
0.71%
LAC
32
0.69%
T16H
28
0.6%
BBE
28
0.6%
NCS
27
0.58%
CPD/CYP90A1
27
0.58%
TAT
25
0.54%
GGPPS
25
0.54%
AACT
25
0.54%
COMT
24
0.52%
CSE
24
0.52%
8HGO
22
0.47%
CNMT
22
0.47%
SQE
22
0.47%
FNS
21
0.45%
CCR
21
0.45%
FPPS
21
0.45%
DFR
19
0.41%
TPS
19
0.41%
MVK
18
0.39%
16OMT
17
0.37%
CYP51G1
17
0.37%
G8O/G8H
16
0.34%
MVD
16
0.34%
GES
15
0.32%
IO
15
0.32%
COR
14
0.3%
CCoAOMT
14
0.3%
CPR
14
0.3%
MPO
13
0.28%
CYP80B1
12
0.26%
ANS/LDOX
12
0.26%
ROT3/CYP90C1
11
0.24%
SQS/FDFT1
11
0.24%
MCT/IspD
11
0.24%
CHS
10
0.21%
F5H/CYP84A
10
0.21%
SMO1/SMO2
10
0.21%
PAL
9
0.19%
BR6OX1/CYP85A1
9
0.19%
FLS
8
0.17%
FK
8
0.17%
DXS
8
0.17%
6OMT_4OMT_SOMT
7
0.15%
F3'5'H/CYP75A
7
0.15%
HPPR
7
0.15%
IDI
7
0.15%
PMK
7
0.15%
ISY
6
0.13%
HMGR
6
0.13%
LAMT
5
0.11%
XMT_MXMT_DXMT
5
0.11%
HDS/IspG
5
0.11%
TDC
4
0.09%
ADC
4
0.09%
TYDC_DDC
4
0.09%
HMGS
4
0.09%
DXR
4
0.09%
CYP80F1
3
0.06%
DWF1
3
0.06%
DET2
3
0.06%
CYP719
2
0.04%
CHI
2
0.04%
CPI1
2
0.04%
HYD1
2
0.04%
DWF7
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
CMK/IspE
2
0.04%
ODC
1
0.02%
DWF5
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 666 | 19 | BAHD (339) | View species results |
| Alkaloid pathway | 492 | 23 | NMT (179) | View species results |
| Phenylpropanoid pathway | 341 | 11 | POD (152) | View species results |
| Flavonoid pathway | 218 | 12 | UFGT (139) | View species results |
| Steroid pathway | 176 | 11 | SMT1/SMT2/SMT3 (66) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1500 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 491 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| AcruScioBoG_102831_HRSCAF_1030440002590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102831_HRSCAF_1030440003270.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102833_HRSCAF_1030520013070.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102834_HRSCAF_1030550015120.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102836_HRSCAF_1030720030320.1 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| AcruScioBoG_102836_HRSCAF_1030720030320.2 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| AcruScioBoG_102836_HRSCAF_1030720031300.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102837_HRSCAF_1030740035690.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_102837_HRSCAF_1030740035690.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_102837_HRSCAF_1030740039560.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102839_HRSCAF_1030930047460.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102839_HRSCAF_1030930049070.2 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102839_HRSCAF_1030930049070.4 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102839_HRSCAF_1030930052480.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_102839_HRSCAF_1030930052490.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_102839_HRSCAF_1030930052890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_102841_HRSCAF_1031140063280.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_11560_HRSCAF_116090075170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_11560_HRSCAF_116090075170.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_11560_HRSCAF_116090075170.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_11560_HRSCAF_116090075170.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620084870.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620084880.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620085470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620085890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620087650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700095360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110097620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110101790.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110105740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18778_HRSCAF_188630111980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18778_HRSCAF_188630115370.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18782_HRSCAF_188670118580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_19074_HRSCAF_191600122350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_19743_HRSCAF_198340136920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_22153_HRSCAF_222590152040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_25048_HRSCAF_251670157110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_25048_HRSCAF_251670158020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_26769_HRSCAF_268990173290.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_26769_HRSCAF_268990173710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |