Amaranthus cruentus (amaranthus_cruentus)
Imported from atlas release summary for Amaranthus cruentus.
2564
Candidate Protein Records
2058
Pathway-Level Records
4652
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
4652
Family-Level Calls
BAHD
8.43%
NMT
5.67%
C4H
5.5%
C3'H/CYP98A
5.14%
4CL
4.84%
UGT
3.76%
IFS
3.46%
POD
3.31%
Other Families
59.89%
More Families (97)
UFGT
151
3.25%
7DLGT
147
3.16%
CYP76
144
3.1%
T3O
125
2.69%
F3H
106
2.28%
DWF4/CYP90B1
99
2.13%
SMT1/SMT2/SMT3
92
1.98%
STR
83
1.78%
CAD
80
1.72%
F3'H/CYP75B
79
1.7%
IFR
70
1.5%
CODM/T6ODM
67
1.44%
BR6OX2/CYP85A2
67
1.44%
RAS
57
1.23%
CAS
57
1.23%
SGD
54
1.16%
CYP71
52
1.12%
H6H
51
1.1%
SLS
48
1.03%
GS
47
1.01%
PMT
44
0.95%
HCT
42
0.9%
7DLH
40
0.86%
ANR
40
0.86%
PYKS
37
0.8%
TRI/TRII
35
0.75%
CYP90D1
33
0.71%
LAC
32
0.69%
T16H
28
0.6%
BBE
28
0.6%
NCS
27
0.58%
CPD/CYP90A1
27
0.58%
TAT
25
0.54%
GGPPS
25
0.54%
AACT
25
0.54%
COMT
24
0.52%
CSE
24
0.52%
8HGO
22
0.47%
CNMT
22
0.47%
SQE
22
0.47%
FNS
21
0.45%
CCR
21
0.45%
FPPS
21
0.45%
DFR
19
0.41%
TPS
19
0.41%
MVK
18
0.39%
16OMT
17
0.37%
CYP51G1
17
0.37%
G8O/G8H
16
0.34%
MVD
16
0.34%
GES
15
0.32%
IO
15
0.32%
COR
14
0.3%
CCoAOMT
14
0.3%
CPR
14
0.3%
MPO
13
0.28%
CYP80B1
12
0.26%
ANS/LDOX
12
0.26%
ROT3/CYP90C1
11
0.24%
SQS/FDFT1
11
0.24%
MCT/IspD
11
0.24%
CHS
10
0.21%
F5H/CYP84A
10
0.21%
SMO1/SMO2
10
0.21%
PAL
9
0.19%
BR6OX1/CYP85A1
9
0.19%
FLS
8
0.17%
FK
8
0.17%
DXS
8
0.17%
6OMT_4OMT_SOMT
7
0.15%
F3'5'H/CYP75A
7
0.15%
HPPR
7
0.15%
IDI
7
0.15%
PMK
7
0.15%
ISY
6
0.13%
HMGR
6
0.13%
LAMT
5
0.11%
XMT_MXMT_DXMT
5
0.11%
HDS/IspG
5
0.11%
TDC
4
0.09%
ADC
4
0.09%
TYDC_DDC
4
0.09%
HMGS
4
0.09%
DXR
4
0.09%
CYP80F1
3
0.06%
DWF1
3
0.06%
DET2
3
0.06%
CYP719
2
0.04%
CHI
2
0.04%
CPI1
2
0.04%
HYD1
2
0.04%
DWF7
2
0.04%
HDR/IspH
2
0.04%
MDS/IspF
2
0.04%
CMK/IspE
2
0.04%
ODC
1
0.02%
DWF5
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 666 | 19 | BAHD (339) | View species results |
| Alkaloid pathway | 492 | 23 | NMT (179) | View species results |
| Phenylpropanoid pathway | 341 | 11 | POD (152) | View species results |
| Flavonoid pathway | 218 | 12 | UFGT (139) | View species results |
| Steroid pathway | 176 | 11 | SMT1/SMT2/SMT3 (66) | View species results |
| Rosmarinic acid pathway | 165 | 7 | C4H (56) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1500 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 491 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| AcruScioBoG_13798_HRSCAF_138620084880.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620085470.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620085890.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_13798_HRSCAF_138620087650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091570.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700091580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_14204_HRSCAF_142700095360.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110097620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110101790.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110102700.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_17730_HRSCAF_178110105740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18778_HRSCAF_188630111980.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18778_HRSCAF_188630115370.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_18782_HRSCAF_188670118580.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_19074_HRSCAF_191600122350.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_19743_HRSCAF_198340136920.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_22153_HRSCAF_222590152040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_25048_HRSCAF_251670157110.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_25048_HRSCAF_251670158020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173290.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_26769_HRSCAF_268990173290.2 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| AcruScioBoG_26769_HRSCAF_268990173710.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990173710.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_26769_HRSCAF_268990176250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3703_HRSCAF_37190187480.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3703_HRSCAF_37190187480.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3703_HRSCAF_37190190010.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3703_HRSCAF_37190191640.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3895_HRSCAF_39120192820.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_3895_HRSCAF_39120193630.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380212830.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.10 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.11 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.12 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.5 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.6 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.7 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.8 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213620.9 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213640.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| AcruScioBoG_4119_HRSCAF_41380213650.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |