PlantSME Plant secondary metabolism enzyme database

Andreaea rupestris (andreaea_rupestris)

Imported from atlas release summary for Andreaea rupestris.

684
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.49% Alkaloid pathway 22.95% Terpenoid pathway 22.37% Rosmarinic acid pathway 10.23% Flavonoid pathway 10.09% Steroid pathway 6.87%
Family Distribution
4CL 6.19% BAHD 5.56% C4H 5.38% C3'H/CYP98A 5.38% NMT 4.98% POD 4.7% CYP76 4.01% IFS 3.44%
Other Families 60.37%
More Families (96)
PAL 51 2.92% STR 45 2.58% DWF4/CYP90B1 43 2.46% T3O 42 2.41% IFR 41 2.35% GS 38 2.18% TRI/TRII 31 1.78% F3H 31 1.78% CAD 27 1.55% CYP71 27 1.55% COMT 26 1.49% UFGT 25 1.43% UGT 25 1.43% PYKS 24 1.37% BR6OX2/CYP85A2 23 1.32% T16H 22 1.26% 7DLGT 21 1.2% F3'H/CYP75B 21 1.2% SMT1/SMT2/SMT3 21 1.2% 16OMT 18 1.03% CODM/T6ODM 16 0.92% CYP90D1 16 0.92% CAS 16 0.92% SGD 15 0.86% H6H 15 0.86% CSE 14 0.8% RAS 14 0.8% F3'5'H/CYP75A 13 0.74% HCT 13 0.74% CNMT 12 0.69% COR 11 0.63% G8O/G8H 11 0.63% CPD/CYP90A1 11 0.63% SLS 10 0.57% LAMT 10 0.57% LAC 10 0.57% AACT 10 0.57% IO 9 0.52% DFR 9 0.52% GGPPS 9 0.52% CHS 8 0.46% PMT 7 0.4% 8HGO 7 0.4% ANR 7 0.4% FNS 7 0.4% CCR 7 0.4% CPR 7 0.4% DET2 7 0.4% CYP719 6 0.34% ISY 6 0.34% CYP80B1 6 0.34% DWF1 6 0.34% ROT3/CYP90C1 6 0.34% MVK 6 0.34% 7DLH 5 0.29% ADC 5 0.29% SQS/FDFT1 5 0.29% HYD1 5 0.29% TPS 5 0.29% MVD 5 0.29% CHI 4 0.23% F5H/CYP84A 4 0.23% SQE 4 0.23% BR6OX1/CYP85A1 4 0.23% HMGR 4 0.23% MPO 3 0.17% 6OMT_4OMT_SOMT 3 0.17% BBE 3 0.17% NCS 3 0.17% XMT_MXMT_DXMT 3 0.17% CCoAOMT 3 0.17% TAT 3 0.17% HPPR 3 0.17% SMO1/SMO2 3 0.17% FPPS 3 0.17% HDS/IspG 3 0.17% GES 2 0.11% ANS/LDOX 2 0.11% DWF5 2 0.11% DWF7 2 0.11% CYP51G1 2 0.11% DXR 2 0.11% PMK 2 0.11% HMGS 2 0.11% IDI 2 0.11% DXS 2 0.11% GPPS 2 0.11% CMK/IspE 2 0.11% TDC 1 0.06% TYDC_DDC 1 0.06% ODC 1 0.06% FK 1 0.06% CPI1 1 0.06% MCT/IspD 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (75) View species results
Alkaloid pathway 157 20 NMT (28) View species results
Terpenoid pathway 153 20 BAHD (66) View species results
Rosmarinic acid pathway 70 7 C4H (21) View species results
Flavonoid pathway 69 8 UFGT (19) View species results
Steroid pathway 47 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 599 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CAS
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Gene Pathway Family Confidence Status Best Target
Arupctg000677_np121212120032710 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg000757_np121212120050570 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg000821_np121212120063080 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg000951_np121212120092500 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001306_np121212120142100 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001306_np121212120142140 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001362_np121212120152230 Steroid CAS medium pass CAS__00010__sp_Q8W3Z3_CAS2_BETPL
Arupctg001450_np121212120164390 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001483_np121212120171100 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001630_np121212120192450 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Arupctg001691_np121212120208260 Steroid CAS medium pass CAS__00003__sp_H8ZM73_CAS_ABIBA
Arupctg001799_np121212120218730 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001800_np121212120221230 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg001876_np121212120235240 Steroid CAS medium pass CAS__00007__sp_Q43153_CYSC_SPIOL
Arupctg002020_np121212120245810 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH
Arupctg002059_np121212120251740 Steroid CAS medium pass CAS__00012__sp_Q9FN48_CAS_ARATH