PlantSME Plant secondary metabolism enzyme database

Andreaea rupestris (andreaea_rupestris)

Imported from atlas release summary for Andreaea rupestris.

684
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.49% Alkaloid pathway 22.95% Terpenoid pathway 22.37% Rosmarinic acid pathway 10.23% Flavonoid pathway 10.09% Steroid pathway 6.87%
Family Distribution
4CL 6.19% BAHD 5.56% C4H 5.38% C3'H/CYP98A 5.38% NMT 4.98% POD 4.7% CYP76 4.01% IFS 3.44%
Other Families 60.37%
More Families (96)
PAL 51 2.92% STR 45 2.58% DWF4/CYP90B1 43 2.46% T3O 42 2.41% IFR 41 2.35% GS 38 2.18% TRI/TRII 31 1.78% F3H 31 1.78% CAD 27 1.55% CYP71 27 1.55% COMT 26 1.49% UFGT 25 1.43% UGT 25 1.43% PYKS 24 1.37% BR6OX2/CYP85A2 23 1.32% T16H 22 1.26% 7DLGT 21 1.2% F3'H/CYP75B 21 1.2% SMT1/SMT2/SMT3 21 1.2% 16OMT 18 1.03% CODM/T6ODM 16 0.92% CYP90D1 16 0.92% CAS 16 0.92% SGD 15 0.86% H6H 15 0.86% CSE 14 0.8% RAS 14 0.8% F3'5'H/CYP75A 13 0.74% HCT 13 0.74% CNMT 12 0.69% COR 11 0.63% G8O/G8H 11 0.63% CPD/CYP90A1 11 0.63% SLS 10 0.57% LAMT 10 0.57% LAC 10 0.57% AACT 10 0.57% IO 9 0.52% DFR 9 0.52% GGPPS 9 0.52% CHS 8 0.46% PMT 7 0.4% 8HGO 7 0.4% ANR 7 0.4% FNS 7 0.4% CCR 7 0.4% CPR 7 0.4% DET2 7 0.4% CYP719 6 0.34% ISY 6 0.34% CYP80B1 6 0.34% DWF1 6 0.34% ROT3/CYP90C1 6 0.34% MVK 6 0.34% 7DLH 5 0.29% ADC 5 0.29% SQS/FDFT1 5 0.29% HYD1 5 0.29% TPS 5 0.29% MVD 5 0.29% CHI 4 0.23% F5H/CYP84A 4 0.23% SQE 4 0.23% BR6OX1/CYP85A1 4 0.23% HMGR 4 0.23% MPO 3 0.17% 6OMT_4OMT_SOMT 3 0.17% BBE 3 0.17% NCS 3 0.17% XMT_MXMT_DXMT 3 0.17% CCoAOMT 3 0.17% TAT 3 0.17% HPPR 3 0.17% SMO1/SMO2 3 0.17% FPPS 3 0.17% HDS/IspG 3 0.17% GES 2 0.11% ANS/LDOX 2 0.11% DWF5 2 0.11% DWF7 2 0.11% CYP51G1 2 0.11% DXR 2 0.11% PMK 2 0.11% HMGS 2 0.11% IDI 2 0.11% DXS 2 0.11% GPPS 2 0.11% CMK/IspE 2 0.11% TDC 1 0.06% TYDC_DDC 1 0.06% ODC 1 0.06% FK 1 0.06% CPI1 1 0.06% MCT/IspD 1 0.06% HDR/IspH 1 0.06% MDS/IspF 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 188 12 POD (75) View species results
Alkaloid pathway 157 20 NMT (28) View species results
Terpenoid pathway 153 20 BAHD (66) View species results
Rosmarinic acid pathway 70 7 C4H (21) View species results
Flavonoid pathway 69 8 UFGT (19) View species results
Steroid pathway 47 13 CAS (16) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 599 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: G8O/G8H
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Gene Pathway Family Confidence Status Best Target
Arupctg000612_np121212120017390 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg000906_np121212120085010 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Arupctg001099_np121212120111110 Alkaloid G8O/G8H medium pass G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001185_np121212120122530 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001250_np121212120127140 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001489_np121212120172420 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001490_np121212120173580 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001603_np121212120188300 Alkaloid G8O/G8H medium borderline G8O_G8H__00003__sp_F8S1H3_C7BL1_HELAN
Arupctg001677_np121212120206240 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Arupctg002021_np121212120246830 Alkaloid G8O/G8H medium borderline G8O_G8H__00002__sp_D1MI46_C76BA_SWEMU
Arupctg002021_np121212120246860 Alkaloid G8O/G8H medium borderline G8O_G8H__00004__sp_Q8VWZ7_C76B6_CATRO